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Gene detail [Fasta]

Species Heliconius melpomene
GeneHMEL010553
PositionHE671093:121733..142168[GBrowse]
Heliconius Genome Projecthttp://agripestbase.org/hessianfly/?q=gbrowse&name=HMEL010553
sequence mRNA:
>HMEL010553-RA
TTTTGACTTGGCGGCCACAAAACACAGAAAAATAAATGTTAGACTGACTTTCGCTTTTAGGTAAAAAAACAAGTACAAAA
TTTTAAAAAACTATTTATTTTTACAAATCCGTGAGTCAGAGTAAATTATACTACTGCGTAAATAGAAAATAAAAGTTATT
AACTAAATTGAAATTGTTTGTATGCATGTACAATAGGCGCGATTATGTTGACATTCAATATGGCGATTGGCGGTATGTCG
TCAGTGCTGTGCTGTGTCGTGTAGGTACTTGTGGATAACCAAACCAATACATATACAAACCAGCCTATGAACAGCAGAGC
CCCGATTCAGCAAGCATTGAAGACATCTGAGGATCTAGTATAGTTTAATCCTAAGTAGCTTTTCTTTTGAAATACAAGTG
ATTTGATGTTAAACAGTGACATTAAAGACTAATTGTGTTCTCCTTGACACTAAGACAAAAAAATGTGATTTGATTTACAA
CTTTACATCAGTTACAAACGTTAAAAACTTTAACACTACACCATTTTCTGTGATATATTGGTAAATAATACTGAGATTTT
TGACCTATATACAAGTAAAACAAAAACATCAAAAATGTCAAGCAATCCTCAGTGGAAGATGTTCCAGCCGCCAGATTCAA
TTTCCTCCTCCTTGCAAGACATTTTAGATCATGCCAAACAAGTTTTTCGTAATGGTTCTTACAGCAGTGACTTTCCAAGC
TCCCCACGAGATAACTTTAATAATATGGGTAACAAGAGTAGTGGTAACAGATTCACTCTTGGCAATTTCAATATGGACTT
GTGTCCCATGGGAGACTCAAATATGTATTCCTCCAGTTCAACTAACAATCAATCCCAGTATGATTCCGTGAGCCACCCAC
CTATTAGAGAAACTGGCATAATTGAGAAATTACTTCATTCCTATGGCTTTATACAATGTTGTGAGAGGCAGGCGCGTCTA
TTCTTTCACTTCAGCCAGTTTGGTGGTAACATAGATCACTTGAAGATAGGTGATCCTGTAGAATTTGAAATGACTTACGA
TCGTCGTACGGGAAAGCCGATAGCTTCTACTGTTACCAAGATAGCTCCTGAGGTAGTACTTAGTGAAGCGAGAGTGACAG
GCTTAGTGACCACTGGGGTCAAGGGGGAGGGCTCCGGCGACAATACAGGCAGGATCACATACGAGAATAGAGGCGAATGT
TTTTTCTTGCCCTACACTAAAGACGATGTCGAAGGGAATGTCACACTTCGTACTGGGGATGCTGTCAGCTTTCAGATCGC
TACCAACCAAAGAGGCACGTTGGGTGCTTGTCACGTACGTTTTGAGAATCCTGCCCATCCAGTTAAGTACCATGGTGTGG
TATGCTCGAAGAAGGAAAATTTTGGTTTCATAGAAAGAGCCGATGTTGTCAAAGAAATCTTTTTTCACTATTCTGAAGCT
AAGACCAAGGAAGATTTATCGTTAGGTGATGACGTCGAGTTTATAATACAAACAAGACATGGTAAAGAGGTGGCGTGCAA
CATAACGAAACTACCCAGTGGCTCAGTGGTGTTTGAAGATGTCAGCCCAGAAATTATGCGTGGTCAAGTGTTGAAACCAC
TTGAACGCGGAATAATGGCGCGGGCGACGCAAAACGATCCACTGCCGGGCAGGATCCGATATCGTGCTGCCGATCACTCC
GAAGTTGAGGTATCTTTCGGGGATAAAGATCAATGCGGAGAGTTCACCCTCCGCCATGGTGATTGGGTACAATTCCAAGT
GGCTACAGACAGGCGGGACCAACTGAAGCGCGCTACTAATATCTCTCTACTCGACGAATCTTTCAACGTGTCTGGAGAAC
GGCGGGAACAAGGAATGGTGTGCTCCTTGAGAGAAGGATTCGGATTAATACGGTGTATTGAACGAGAACAAACCATGTAC
TTTCATTTCGCTGAAGTACTACGTCTCGGTCAGGAGCTTAGTGTTGGAGATGAGGTGGAGTTCACTGTGGACCCGGTGTC
TACCTTCACCAACATGAACAACCGTCAATCGGCCATACGTGTCAAGCACCTGCCGGCAGGCAGCGTCCAATTCGAAACGC
TCTTGGAGCGCGGCGTTCGCGGCATTGTGGCTAAAGAGGCGCCTTGCTATCCCTCGTCTGCAAGTCCAACTCGGGCACCG
GAAACTGGTATAATAACTTGTCAAATTAACAACATGAAAAAGTCGGTCTCATATACCGCTAAGAAGTGCGAGTCGAAGAT
GTTGCCGCGTGTCGGTGATAAGGTCATTTTCGATATATACCAGGTAAAAAGGACTAAAGAGTTGGTAGCAATGGCCATAC
AAACTCAACACAGCCTCACAAATGGCACCGCGAACGGAGCCTCGAACCTCCGACCCATCATGCAAGGATTCATAGCGGCT
CTGAAGGACGGCTTTGGATTCATAGAAACCGCTGACCACAACAACGAAGTTTTCTTCCATTTCAGTAATTTCGAAGGCAA
CCCCGACAGTCTGGAGCTGGGCACGGAAGTGGAGTACAGTCTTGGTCGCGGGAACGGATCCGGCGGAGGGTGTGCCAGTG
CGGAGTTTGTTCGTGTATTACCTCGAGGAAGTATTCATATAGCGAAACCGTTGAAGGTTATGTCGAAAGGCACGGTCGTA
CGTACCCTGAGAGCCCTTAATCCTGATCAAGCTAGGTATTCAGGTCTCATCCAAACAGAGCGCGGTCTATCGTACGAGTT
CGGTATAATGGGGCTCTCGTGCAAGCGCGAGATACTGCAAGTTGGGGACCCGGTCGCCTTCCAGGCGGACGCTGAGGGCA
GGGCGACCAACATTGTGCCTGTGAGGAAGAAGCGTAGAGCCATTGTTGATGCTATTAAAGATGGCTTTGGATTTCTATCA
GTCGAATCGGAGGACTCTCGTCGTCTCTTCTTCCACATGTCGGAGGTACGTGGCAACTCGGCGGATCTCCAACCCGGTGA
CGCCGTGGAGTTTGTTATGCTGACCAACACGAGGAACGGGAAGTCATCCGCTTGCAATGTGGTTAAAATCGGGTTAGTAT
GCTAAACAAAACTTCGTGTAGAGACCATTCGTTTTTCACGAACGGAATTTAATACCGCGCTTTGTCTTGTTATCAAAGCG
AGGATTTTTTTTTTTTTTTATATTTATTATTAGCGTATACAAACTTACTTACACTAATAATGTTATATTACGATCTAGCC
ATTACGTTGACTAATGAGTAATTTAATTTTAACCTACTTTTATAATAAACAATACTATGCTAA
PEP:
>HMEL010553-PA
MSSNPQWKMFQPPDSISSSLQDILDHAKQVFRNGSYSSDFPSSPRDNFNNMGNKSSGNRFTLGNFNMDLCPMGDSNMYSS
SSTNNQSQYDSVSHPPIRETGIIEKLLHSYGFIQCCERQARLFFHFSQFGGNIDHLKIGDPVEFEMTYDRRTGKPIASTV
TKIAPEVVLSEARVTGLVTTGVKGEGSGDNTGRITYENRGECFFLPYTKDDVEGNVTLRTGDAVSFQIATNQRGTLGACH
VRFENPAHPVKYHGVVCSKKENFGFIERADVVKEIFFHYSEAKTKEDLSLGDDVEFIIQTRHGKEVACNITKLPSGSVVF
EDVSPEIMRGQVLKPLERGIMARATQNDPLPGRIRYRAADHSEVEVSFGDKDQCGEFTLRHGDWVQFQVATDRRDQLKRA
TNISLLDESFNVSGERREQGMVCSLREGFGLIRCIEREQTMYFHFAEVLRLGQELSVGDEVEFTVDPVSTFTNMNNRQSA
IRVKHLPAGSVQFETLLERGVRGIVAKEAPCYPSSASPTRAPETGIITCQINNMKKSVSYTAKKCESKMLPRVGDKVIFD
IYQVKRTKELVAMAIQTQHSLTNGTANGASNLRPIMQGFIAALKDGFGFIETADHNNEVFFHFSNFEGNPDSLELGTEVE
YSLGRGNGSGGGCASAEFVRVLPRGSIHIAKPLKVMSKGTVVRTLRALNPDQARYSGLIQTERGLSYEFGIMGLSCKREI
LQVGDPVAFQADAEGRATNIVPVRKKRRAIVDAIKDGFGFLSVESEDSRRLFFHMSEVRGNSADLQPGDAVEFVMLTNTR
NGKSSACNVVKIGLVC
Swiss-ProtCold shock domain-containing protein E1
SUPERFAMILYSSF50249  Nucleic acid-binding proteins superfamily     
Gene3DG3DSA:2.40.50.140     
PfamPF00313  CSD; 'Cold-shock' DNA-binding domain     
SMARTSM00357     
ProSitePatternsPS00352  COLD_SHOCK; 'Cold-shock' domain signature.     

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