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Gene detail [Fasta]

Species Dendroctonus ponderosae
GeneDPO007548
PositionSeq_1102691:3323..10197[GBrowse]
sequence mRNA:
>DPO007548-RA
ATGGTAAGTTTATATACCCTGGAAACATGCCCTTACCAAGCTGACGATCCTCCGTACTTACCAGTTGGTACAGCAGTGAG
TGCCAAGTACAAGGGAGCCTTTTGCGAAGCCAAAGTCAGCAAAGTGGACCGCATTGTGAAATGCAAGGTGACGTTCAAAA
GCGGGCTGGGAGCTGCCACAGTGTCGGATAATGAAATAAAGGGCACCCTGAGAGTGGGGCAACAGGTTCTGGTGAAGCAC
AACGATCATAAGGAACTGGTGGAGGCCACTATCACTAAAATACAAGATTGCAGCCAATATACAGTTGTTTTTGATGACGG
CGACATCACCACCTTAAGACGGACTGCACTTTGCCTGAAGAGCGGCAGACATTTTAATGAGAGCGAAACGTTGGACCAGC
TCCCGCTAACCCATCCAGAGCACTTCGGTATCCCTGTAATGGGCGGCCGCAGAGGCAGGAGAAATCGGCTGCTTAAAGAC
GAGAGCAGTGATGACGAAATTGAGGAGGAAAACGAGCCAGATTTGGAGGGATACACGCAAGATATTGGCCGAGTTGTCAG
TGTGGAAACTGGCGAAACGAAGCGCGGCAAGGAAAAGTGGTTCCCCGGTTTGATTGTCATCCCCTCTGCCCAACCAACTG
TGAAAATCAACGTCAAAGATGAGTTTCTCATCAGATCTTTCCGGGATGATCGATACTACACAGTTCCGAAAAAAGAGGTC
AGCGAGTTTAACAAGGAGCTAAGTGAGCGCATCGAGAGCTCAGGTCTTGCCGAAGCTATCCAGAAGGCGAACAAATTCCT
GAACGGCAACGATTTGCCGCTACATTGGGAGAAAAGCTCGCTCTTCAACCTGTCAGTGGACAGCGACAGCGACGACAACG
CAAGCGACACTTCCGACGAGGAACAAAGCGAAGAAAAGGACCGATTTGTGGCTCAGCTGTACAAGTACATGGACGATTCC
GGAACCCCTTTGAACAAGACACCGACGATATCCAGCAAGGACATTGATCTGCATCGTCTGTTCCGAGTGGTGCATAAAAT
GGGCGGCTGCAATCGTGTGACCAATCAAAACAAGTGGAAATCGGTGGCGACCAGAATGAAGCTCACAGTGAACCAGAATG
TTTCCAATCAAGTCAAGTCAGTGTATAAAAAATGCCTACTGAGCTACGAGGGATTTTTTCGCACACTGGGTGTCACAATG
TCGAACCCCACTCGCCCGACCAAGAAGGACAAAGGCAGAAGCTTGATTAGAGACAAAGATAGGACACCGATGAGCAGCCC
TAGGCCAGAACGAGAAGACGATATGCCCGAGAAGCTAGTGGAACGGAAGAGCACCCCATTACCGGAGATCCGAACCAAAA
AGAAGTCCGAATCCAAGGAAAAGGATGTCGTGCCGAAAAAACCGAAATCTGAACCTCGCGATCCTGGCAGCGACTTCTCA
GACACGCCCAGCACATCGGGGATGCGCTCCAAACGGCAAGACGTCAAAGTGTCCAAGGAAAAGAAAATCAAAACGCCGCA
AGGCGAGAAAATCAAGATGCCGATGGAGAAGTTTGAGGACTATCCGAAGAAAGAGGAAAAGGTGCAATTCACACGCTCTA
AATCCTCCAGCAGCTCCAGCTCCGCGTCCAAGCTGAAAGATGTGCCGAAAGAAGTCACCCTCACTAGACCTAGCAAGGAA
TCGCCCGCAAAATGTTTACCCAAATCGCCGAAGAAAGGGATCAAAGAAGAGGAGGGAGTACAAGACAAGGACAAGAAGCC
AAAGATCAAGAAGGCTTCAGAGATCCTTATCGAGCCCCACCAAACAGCCAATATTGGGGACAAACTGATCGTCTACTACG
GACCTACTAACGAGTCCAAAGTCACCTACGAAGCTAAAGTGGTGGACATGGATAAGGACCAAACAGGGCCCATTTACTTG
GTGCATTACACAGGCTGGAATACCAGGCAAGAACAACGGCTTTTCCTCAGACGGGTAAAACAATACGATGAATGGATTCC
AGCTTGTCGCGTAGCTGAAAACCTTAGTTCTGGCGCAAAGTCGAAAAGAAGCAAAGTTCCAGCTCCAGTCAATGTAAAGC
CGGGCTCTTCAGGCGGTCCATCAGCATCTTTCCCCAAGTTGCCATCAACGAAGAGAAATCGCCTTACTTCGGTGTCCAGC
AGAGAGGAGAAGCCTCCCCGATCCACCACTCCATCGAGCGGAGCTTCTTCGAGCAGCACGTCGAAAAGCCCCGCCACGTG
CACAGTGCGCTCGAGTCGTCTGGCGGCAAAACAAGAGGCAAAGAAGCGGCGAATTTCTGGTCAAACGGATGCCTTTCTCC
CGTCGGAATCGGACAGCGACAGTTGCGAAAGCGAAGCAGAACTGCCCAGAACGCGAAGCGGCAGCCTCAAAACCGAAGAC
GCAGACCTCAGAGTGTACCGGAAGAGACAATCGCGTTCCACACCAACGTCACGGCAGCAGAAGCGCAAGGAGGACGGCAA
CAAGGACGAACCGTCCAGAAAGAAAGCCAAGAAGTACTCAGCAGGTGAAAGCGACGAGGAGGAGGAGAGTCTGCGCCATC
CGAGAGGACGGGACTTTGATTTGAACGAAATTCGCAATGAGCTCAAGGGAATTTCGCAGGCAATTAAGCCTCCGTCTGCG
GCTGGCGCTGACAAGGACGCTGTCCCGTCTGAGGAGGGTTTCGACAAGGTCCAATCGATTAAAGAGGAGCTGATCGACGT
TAAGGTTGAGGAAGATCCAACGCCGAAACTGTCGCCCAAGGCTGCCACTTTAGAGCCTTCGTGCAGCTCTGAAGACATTT
ACGAGTTCAAGGAACCGGAACCGTTTGAATTCGAAGCCAGAGCGAAGCTGGGCGATGATAAAACGTCGAAAAAGCGACTG
CCTCGGTTATTCGAGCCATTGGAGGACAAATCCCCTAGAAAAAGAACTGGGGCACTTTCCCCACTCTCTCCTGGCAAAAG
CGACAAACTGGATCATCCAGAGCCCAGGACGTACTCGCGTGCTCCGAAGAAAATGATGCTTTCCGATGATGAGGACGAAG
ACGAAGACATAATGGATGAGGAGGGTATAGCTATGAGCGACATCAATGAAGACCCGTTCGATAAGCTGATTGAGTCGCCG
AGTTTCAACTTGAGCAAGACCGGATTGGAGCCGGTTGTTGAAAAGCCCGTGGCTCTGTTCGCTGAGACCTCAGCTGAGCT
GTTCAAAGAGCCGGGAGAAACGTCGGATGAGTACAGCCGCGACATGGAGCTGTCGGACTGCGAGTCTCAAACCCAGATCT
ACAGCCGCGGTGTCTACAACTTGTTCACCGGGACATTTTCCAAGTCGCCCAATGAGAGAAACACTCCTGACTTTGCCAGC
AGCAAAACCGATGAAGGAAAAACGACGAACAGTGACGACGACGAGATTCAAGCTCAAATTCAAAGGGCGATTGATCAGAG
CTCGTCAACAGACGATGATAGCAGCAGCGTTCTCATAGATATTCCCTTAGCAGCCAGCAGTTCGCCGAAAACTCTTGAAG
ATCCATCCACTAGCAGCAGCAGCATTGTTCCTGCTTTAAGTCTGTCGGCCGCCGTTTCGGTGATTGCGCCCTCATTATCA
ATCCGAGTGCATGAGATGGACGACGTTATTCCGGAACCGCCCAATCAGGAGCCTATCGAAGCGCCTGCGCCACCGCCACC
ATCTGCACCTTCTCCCGGGCCAGTGGCAGATTCAAAGCCTCATTCCCCTAAGAAGCCCATCGATCCAGCGCTTCAAGAAA
CCGACAGCTCTTTGTTAGAGTCCATCGTTTCGAAGCCCCCGTTGATTCTCAATCCAATGCTAGACGACACTGGCAAGGAG
CTGACGGTGAAAACTGGCACCCGAATCGCCGACTCAATTCTGCAGAAATTCAACTTCATCAAGAACAACATAGAGACGAA
GGGGTCAAAAGTAGAATCGCCGGTGCCCCTTCAGATCAGCGCCATTGAAAAGCTGGAGACTCGTACAACTTTGTCCAATC
CTGGCGCGTGGAAACAGGATGCTGACGAAGCCGGACCGTCCACCTCCGAAGTGAAAGAGAGCGAGGACGAGCCGGAGGAG
GACCCCAGGGTTAAGCCCGACGCGCTGCCGCGTCGCCATAGAGGGGCGCTCAGCAAGGCCATTGTCGAAGATTCGGACAG
CGATAGCAGCGACTCGGAGAACCTGGTGATCCGGTCCGAAGATGAAGACGACGACGACGACGACGACGACTCGCAAACCA
ATTCTTCCGACAACAAGCCGCTGATCGAGTGCAAGAACACGGACAGCAACATGTCTTCTTTGCAGAAAACCCTCACCACG
ACCGATGAGTCCCAATCCCAATCCCAACCCCCAGAGGAGGAGAAGCGGAACTTCAGTTTCGATTCGCCACCAGAAGTGCC
TGAAGAGGAGGAGGAAGTTGCGGTGGGGGAAGAGGACGAGGCGCACCCAGTCCCCGAAAAGAAACCGGAGCCTCCTTTGG
AGGTGAAGGAGGACGATCAAAACTTGCTCTGTCTGGAGGTGCTGCCTAGGAGTCCCGCTTCGGTTCCAGATTTTCCTGGA
CCCAGTGAAGCCCCCAGTACGTCATCGGTACACGAGATGCCATTTGCTAGCGCTCCAGGCTCAAGCAACAGCAAGATATT
GCTGGAAACAAAAAAGCACCAACCGCCACCTTTGCTGTTCGCGGCAGAGCGCGGAAACAGAGCGGACGCGCCTGCCACGC
TTGAGAATTCGGCCCCCACAACCCCAGAGAGCACCATCAGCAATCTGTCGCCTAGAGGGGAAAATGGTACCGCTTCGCCT
AATTCGAACGACAGTAAGTCGAATGAGGGCGAACCAGGCTATGGAGAGCAGCGAAGAAGCGCCGGCTTGAAAGTTTCCCA
CTATTGCGAAGAAGATGCGCAACCAGGCAGCGACGTATCAACGTCCAGGAAAGCGACTGATTCGTTCGGACCGCCGATGG
TACACCGAAAACGACGTCGGTCGTTGCGCAATTCTGAAGACGGATGTTCCGGTGTCGCGGTGCTAACAGGCAAACGAGGC
CGAAAGCCGCGGCAGCGTCGCGACAGCGACAGCGACGACGCTTCGGAAAGTTCCATGGCCGGAAGCGGCACGGGCGGTAC
TACGCCCGGAAGTACCACGTCCATGTACGATCGATCGGCACGGTCGCCACGACCTTCCAAATACAACTTCTTTGTCGAAT
TTGACCCCAGCCTGGACAGCAGCCAGAGAATCGCAGTGCTGCAGCAGAAGCTCTCTGAGCTGCGCAAAACTTATGCAGAC
GTCAAGGCGGAACTGGCCACCGTAGAGCGAAGAAGGAAGAAGCTCCGGAGACGAGAAAGGGAAGCTTTGAAGACTGCCAA
ACAGGAGCTGGCCTGCACGTGACAAAAGGGCGGAAAAGTAGCGATCGACGTGGCTCTAGAATGAAAGAGAGTCTGGAGAA
CAGGGATGGGAACCGTTTTTTCCTTCAGCTGTATTTACAATTTACATTACCATGTAAAGGCCTGGTGTTATGTACATAGA
TTAATGTGAAATTATTAA
PEP:
>DPO007548-PA
MVSLYTLETCPYQADDPPYLPVGTAVSAKYKGAFCEAKVSKVDRIVKCKVTFKSGLGAATVSDNEIKGTLRVGQQVLVKH
NDHKELVEATITKIQDCSQYTVVFDDGDITTLRRTALCLKSGRHFNESETLDQLPLTHPEHFGIPVMGGRRGRRNRLLKD
ESSDDEIEEENEPDLEGYTQDIGRVVSVETGETKRGKEKWFPGLIVIPSAQPTVKINVKDEFLIRSFRDDRYYTVPKKEV
SEFNKELSERIESSGLAEAIQKANKFLNGNDLPLHWEKSSLFNLSVDSDSDDNASDTSDEEQSEEKDRFVAQLYKYMDDS
GTPLNKTPTISSKDIDLHRLFRVVHKMGGCNRVTNQNKWKSVATRMKLTVNQNVSNQVKSVYKKCLLSYEGFFRTLGVTM
SNPTRPTKKDKGRSLIRDKDRTPMSSPRPEREDDMPEKLVERKSTPLPEIRTKKKSESKEKDVVPKKPKSEPRDPGSDFS
DTPSTSGMRSKRQDVKVSKEKKIKTPQGEKIKMPMEKFEDYPKKEEKVQFTRSKSSSSSSSASKLKDVPKEVTLTRPSKE
SPAKCLPKSPKKGIKEEEGVQDKDKKPKIKKASEILIEPHQTANIGDKLIVYYGPTNESKVTYEAKVVDMDKDQTGPIYL
VHYTGWNTRQEQRLFLRRVKQYDEWIPACRVAENLSSGAKSKRSKVPAPVNVKPGSSGGPSASFPKLPSTKRNRLTSVSS
REEKPPRSTTPSSGASSSSTSKSPATCTVRSSRLAAKQEAKKRRISGQTDAFLPSESDSDSCESEAELPRTRSGSLKTED
ADLRVYRKRQSRSTPTSRQQKRKEDGNKDEPSRKKAKKYSAGESDEEEESLRHPRGRDFDLNEIRNELKGISQAIKPPSA
AGADKDAVPSEEGFDKVQSIKEELIDVKVEEDPTPKLSPKAATLEPSCSSEDIYEFKEPEPFEFEARAKLGDDKTSKKRL
PRLFEPLEDKSPRKRTGALSPLSPGKSDKLDHPEPRTYSRAPKKMMLSDDEDEDEDIMDEEGIAMSDINEDPFDKLIESP
SFNLSKTGLEPVVEKPVALFAETSAELFKEPGETSDEYSRDMELSDCESQTQIYSRGVYNLFTGTFSKSPNERNTPDFAS
SKTDEGKTTNSDDDEIQAQIQRAIDQSSSTDDDSSSVLIDIPLAASSSPKTLEDPSTSSSSIVPALSLSAAVSVIAPSLS
IRVHEMDDVIPEPPNQEPIEAPAPPPPSAPSPGPVADSKPHSPKKPIDPALQETDSSLLESIVSKPPLILNPMLDDTGKE
LTVKTGTRIADSILQKFNFIKNNIETKGSKVESPVPLQISAIEKLETRTTLSNPGAWKQDADEAGPSTSEVKESEDEPEE
DPRVKPDALPRRHRGALSKAIVEDSDSDSSDSENLVIRSEDEDDDDDDDDSQTNSSDNKPLIECKNTDSNMSSLQKTLTT
TDESQSQSQPPEEEKRNFSFDSPPEVPEEEEEVAVGEEDEAHPVPEKKPEPPLEVKEDDQNLLCLEVLPRSPASVPDFPG
PSEAPSTSSVHEMPFASAPGSSNSKILLETKKHQPPPLLFAAERGNRADAPATLENSAPTTPESTISNLSPRGENGTASP
NSNDSKSNEGEPGYGEQRRSAGLKVSHYCEEDAQPGSDVSTSRKATDSFGPPMVHRKRRRSLRNSEDGCSGVAVLTGKRG
RKPRQRRDSDSDDASESSMAGSGTGGTTPGSTTSMYDRSARSPRPSKYNFFVEFDPSLDSSQRIAVLQQKLSELRKTYAD
VKAELATVERRRKKLRRREREALKTAKQELACT
Swiss-ProtAT-rich interactive domain-containing protein 4B
KEGG     K07874  RAB1A; Ras-related protein Rab-1A     
SUPERFAMILYSSF46774  ARID-like superfamily     
Gene3DG3DSA:2.30.30.270     
PfamPF11717  Tudor-knot; RNA binding activity-knot of a chromodomain      
SMARTSM00333     
ProSiteProfilesPS51011  ARID; ARID domain profile.     
CoilsCoil

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