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Gene detail [Fasta]

Species Dendroctonus ponderosae
GeneDPO011611
PositionSeq_1103026:2504879..2509125[GBrowse]
sequence mRNA:
>DPO011611-RA
ATGTCGAACAATCCTCAGTGGAAATCGTTCCAGCCGCCCCCCGACACTTTGGATCAAGAACCTATTATTGACTTCAAGAC
TATGACCAGTAACGGTAAACGATCATCGACTTCATTCAACTTCAACCGATCTGGCTCGAATACCAGGTTCAGCCAGGAGT
TTCCGATCCTGGGAACGGAAAAGGCCAGTTCCAGTCAAATGTCTTACAGCAATGGGCTTTACAGCTCTTCCAGCACCACT
CATGCTTCTGCCAGGAACTTTCCAGCGATTGGAACCTTTTCAATGGATAGCAATAATGTCTTTAACAGCTCAGGTGATAG
TTCCATGAATACATCATCAAACATATTTTCAAATGGAAATAGCGTTAGTAGTAGCAGCTATAATAATGATTCGTCAAATG
CCGCTAACATGGGAACCCGGGAAACTGGCATCATTGAAAAACTGCTGCATTCATACGGGTTTATCCAGTGCTGTGAACGG
CAAGCACGCTTGTTTTTTCATTTTAGCCAATTCACCGGCAACATTGAGCACTTGAAAATTGGAGATCCGGTTGAATTCGA
AATGACTTATGATAGACGGACTGGTAAACCGATTGCCAGTGCTGTAACTAAAATTGCTCCTGAGGTAATAAAAAAATCGC
TGGTTGGACGAAGTCTACTATTGAAAACAAGGCTTCTAATCAAACTTGAAAACTATGAAGTAATGAGTGAAGAGCGCGTT
ACCGGTACAGTTACTACTGAGGTCAAAGGCGAAGGTTCGGGGGGAGACACAATGGGCAGAATTAGTTACGAAAATAGAGG
TGAATGTTTTTTCTTACCCTACACAAAAGACGATGTAGAAGGAAATGTAGTTTTACGGTCTGGAGATCGAGTCAGTTTTC
AGATCGCCACCAATAACCGCGCAGCGAAACTGCATATTTCTAGAGGAAATCTGGGAGCGTGCCATGTACGCCTAGAAAAC
CCCAAACATCCAGTCAAATACCAAGGAGTTGTCTGTTCGCTGAAAGACAGTTTTGGTTTTATCGAACGTGCCGATGTGGT
AAAGGAAATATTCTTCCATTTCTCTGAAGCAAAAACCAAAGAAGAGTTAAGATTGGGGGATGATGTAGAGTACACTATTC
ATACACGAAATGTACGGTTCCGCAAAGCAGCGAATTTAGTAGATCTGATGGGCAAGGAAGTTGCGTGCAACATCACGAAG
TTGGTCCCTGGTACTGTCATCTTCGAAGATCTCAAGATGGACACTCTAAAGGGGCAAGTTACTAAAGCCATCGACAAAAG
CCCCAGGTCGGCAAATGAGCCTCTTCCCGGTCGAATCACGTACAAAGTAGATGACTCGAAGGAAATCCGAGAAATTTCCT
TTAGCGAGAAGGATCAGATGGGCGACTTTACGCTGAGGTACGGCGACTGGGTCAAGTTCCAAATAGCCACTGATCGGAGG
GATGCGTTAGATCGGGCTACTCATATCGTTTTATTAGATGAGAGTTTTGCAGCTTCTGGAGAAAAGCGGGAACAAGGCGT
AGTGGCGTCATTGAAAGATGGCTTCGGTTTCTTGAAATGCGTTGACAGGGAGGCTCGACTCTTTTTTCATTTTAACGAGA
TTCTCGATGTGAATCATACCAATAATTTGCAAGTCGGTGACGAGTTCGAATTTACTGCAATCCAGGATCAAGCGAACTCC
TACAATACTGGCCACAAAGATAACCGGCAGAACGCAATTCGCATGAAATGCTTGCCTCGAGGCACAGTACAATTCGAGGT
AACCATCGACAGCGATATGACGGGTGTAATAACAAAGGAAATCCCCATCAGCAATTGGTTGAACAGAAGCCCATCGAAAA
TGCAAAATGGAACAACAAACGAGACTAGCGAACCTGGGTTTATTAGTTACAATGTCAACGGTATCAAGAAAACCATAGCT
TACTACACGAAGGATTGTGATATTAAGCATTTACCCAGAGTTGGCGATAAGGTACAATTCGATGTAAATCAAGTAAAGCG
AACAAAAGAATTCATAGCGGTAAAGGTTCAAATCACCCAATCAGCTATCCAAAGCAACGGCATTAAGCATAACATAACCA
GGACGAATAGTCAAATATATCAAGGATTTATAGCCGCTTTGAAGGATGGATTTGGCTTTATTGAAACAACCCAACATGAC
AACGAAGTGTTTTTCCATTTCAGTAACTTTGAAGGAGACTCGAGCACCTTACAACTGGGCCAAGAAGTGGAGTATAACTT
GGCAAGCCGCGGGAATTCTGGGTCGTGCTCAACAGCAGAAAACGTGAAAATAATCCCCAAAGCCGTTCACGAAGATATAC
TGGATGGAGTGGTAATTCGTCCGCTAAGATCCGTCAAACCTGACCAACCGGAGTACTCTGGTCTGATTAAAATCCGGACA
GAGTCACCCGAAGAGAACTCCGAAGAGTACGAATTTGGCATAGTGGGACTGGCAAACAAACGCGAACTACTTCAAGCGGG
CGACCAAGTACAGTTCCAAGTAGATTCCACCAATCGGGCAGCCAACATAGTTGCTGTTCGCAAGAAACTGCGCGCCACAG
TTGACGCTATCAAAGGCCAGTTTGGCTTTCTCGCCTATGAAATCGAAGAAGGCAAGAAGCTGTTTTTCCATATGACTGAA
GTAAAAGACACTGTGGCCTTGAATGTGGGCGATACCGTTGAATTCGTCTTAGTTACCAATCACCGAAGTGGCAAATCTTC
TGCTTGTCACGTTGTTAAAGTCAATGATGTGCTAGCTAGACCGGAAAGACTTATAAGTAGACTGAGAACTGTTTCCCTGG
ACGATACAGGGCCTAAGTTACTAGTGGTGAGACAACCAAAGGGGCCTGATGGTACAAAGGGTTTCTCTCCCGACTTTCGG
GTGCATCGGCTTCCTGGCTCCGTACACGAATAGTTATTGCATATGTTTGCCAAACTCCCCCAAGAAAACACACAAAATAG
GTAAAAATAAAAACCGTTGAATCCACATTCTTTCAGTTGCCTCTTGCCATCTGCAACTGCTTTTGAAATTTGAAAGTGTG
TTAAAGAGTGAGTTGTTGATAAAAATAGACCAAAACGACATTTAGCCATCTGAGAAACTGATTGAGTCTTATCCAGTTTT
TTAGTTCGTATTCAAAGCCATGAAGGAAAGTGTGAAAAGAGCAAATTGAACTCGCTTTATAGACGAAGAGAATAATTTCT
TTGAAACCCCGACTTCACGGTGTATTATGCTGCCATTCCTAGCATTTGGAACTAGACATTTCGTTTAAAAATTCGAATAA
TTCCAAATCGCCTTTCATGTGTTTCGCCTAGTATTAGTATCGGGTGGCGCTCATGATGGTGATTTGCTGGTATATTGGGT
GCGATCGCAAAAAAGTATCATATAAATCGTAAACTAAGTAATATAAACACTGCTTGATAAAAACCAAAAATAAAAAAAA
PEP:
>DPO011611-PA
MSNNPQWKSFQPPPDTLDQEPIIDFKTMTSNGKRSSTSFNFNRSGSNTRFSQEFPILGTEKASSSQMSYSNGLYSSSSTT
HASARNFPAIGTFSMDSNNVFNSSGDSSMNTSSNIFSNGNSVSSSSYNNDSSNAANMGTRETGIIEKLLHSYGFIQCCER
QARLFFHFSQFTGNIEHLKIGDPVEFEMTYDRRTGKPIASAVTKIAPEVIKKSLVGRSLLLKTRLLIKLENYEVMSEERV
TGTVTTEVKGEGSGGDTMGRISYENRGECFFLPYTKDDVEGNVVLRSGDRVSFQIATNNRAAKLHISRGNLGACHVRLEN
PKHPVKYQGVVCSLKDSFGFIERADVVKEIFFHFSEAKTKEELRLGDDVEYTIHTRNVRFRKAANLVDLMGKEVACNITK
LVPGTVIFEDLKMDTLKGQVTKAIDKSPRSANEPLPGRITYKVDDSKEIREISFSEKDQMGDFTLRYGDWVKFQIATDRR
DALDRATHIVLLDESFAASGEKREQGVVASLKDGFGFLKCVDREARLFFHFNEILDVNHTNNLQVGDEFEFTAIQDQANS
YNTGHKDNRQNAIRMKCLPRGTVQFEVTIDSDMTGVITKEIPISNWLNRSPSKMQNGTTNETSEPGFISYNVNGIKKTIA
YYTKDCDIKHLPRVGDKVQFDVNQVKRTKEFIAVKVQITQSAIQSNGIKHNITRTNSQIYQGFIAALKDGFGFIETTQHD
NEVFFHFSNFEGDSSTLQLGQEVEYNLASRGNSGSCSTAENVKIIPKAVHEDILDGVVIRPLRSVKPDQPEYSGLIKIRT
ESPEENSEEYEFGIVGLANKRELLQAGDQVQFQVDSTNRAANIVAVRKKLRATVDAIKGQFGFLAYEIEEGKKLFFHMTE
VKDTVALNVGDTVEFVLVTNHRSGKSSACHVVKVNDVLARPERLISRLRTVSLDDTGPKLLVVRQPKGPDGTKGFSPDFR
VHRLPGSVHE
Swiss-ProtCold shock domain-containing protein E1
SUPERFAMILYSSF50249  Nucleic acid-binding proteins superfamily     
Gene3DG3DSA:2.40.50.140     
PfamPF12901  SUZ-C; SUZ-C motif     
SMARTSM00357     
ProSitePatternsPS00352  COLD_SHOCK; 'Cold-shock' domain signature.     

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