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Gene detail [Fasta]

Species Linepithema humile
GeneLH13514
Positionscf7180001004715:348233..355016[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/lhum_10/?name=LH13514
sequence mRNA:
>LH13514-RA
ATGCGCTCGCGCGACCAGCATGCGGACGTCGCGCTGAAGCCACAGAAGAGGAAATCATCGTCGAAGAAAAGATCGAATCA
TGCGCTCGCGCAATCCCGCTGGCCTAGAGTCGCGATATCACGTAGCGCGGATCCGCGCGAAAAATCTGATGATGCCAAGA
GGAAGTTGCCCCGCTTCGGCGGATGCTCCACCGTCATCGATACAAAACACTCTGACGTCATCGCCTATCGCGATATCGTC
GACCTCTTTTGCGAGAGTAGCGACGCGAGCAACGAAGGAAGAACAACTTGCCCTCAGATCTCCAGCTCGACCGAGCTCGA
TGAAGACAGCGTCGACGTGTGTTCCACGTGCAAGGATTGCGCGGAGTGTCAGTTGCAGCAGCAGCAGCAGCAGCAGAAGA
CTGCGAAGACTGAGGAGAGCCTGATGAACAGCCGTGATGAAGAACTGGCGGAACACTTGGATTATTACGAGGGCGACATC
AGCGATGAGGCGGCTTCCACGCCGAGCACAGTCGCCTCAATGGAACACGAGGAAGCACCCATTCTCGTAGATCTGACCAG
CGAGGAGTCGAAACAAATCACCTGGAAGCAGACGATCCTGAAGCAATTCGACGACACCGAAGAGAGCTCGGAACTGTCGG
AACCTCGTATTATGATAGCCGACAGCTCTAGCAGATTGCAGCGGACCGGCACGGGTGGCACCCTGGCGACCGCCTTGAGG
GATCGCGGTCCTTGCGTGATTCCCGTGCAGCCTAATCGCTCGCTGCCGATCCGACCGGCGCCGCCGATACCGACGCGCTC
GGCGGCGTCGGTTGTGATGTCGCGAAAAGCGCGCTCGATTCTTAAGCTGTCGAAATCGATGGGTGCGGACGTGGTCGAGG
TGCAATCGGATATGTCTCCGAGGGGCTCGTTGACAAATGAGCTGAACGAGTTCCCTTTCGGGCAGCAGGACGACAAGGAC
GACGAAATGATGCTCTCGCGAGAACTCATCGATCACTCGGACTACGTTCTTCCAGATATGACCAATGTCGTGCAGATTGC
AAAAGAGGTCAATAGTGCGAAAAGAAAAAACGACGAAAATCGAGATAAAGAATATGAGAAGGAAATTACCAAGGACATGA
AAAAGCAGAAGAAATCCCACGAAGCGGACGCCAGTCACATACGCGACGAGCGCATCAAAAATATTTTGAAGGAGTACTCG
AAAACCTGCTCCGGTGCTTTGGTCGATAAGAGAGGAAAAAAATCACAGCACTTGTTGGTAAGATTGTGGGATGACAAGAG
GTGCTCGTCATCGATCGTGGTGTCCACTACGCAGCCAGAGGCAGAAAAGTCGAAAGAGATCTGCAACAAAGTTGTCCCGC
CTTTAAGACTGAAGAAAATTGTACGCGAAGCGAGTATCAGCGAATACCGTAACGTCGAAGTGAATGCCGATTCGGGAAGC
GAGTCCAACTACCGCATCGTCACCGGCGCCACGCCGCGTCCGGAACTATCCGGCTACTCCACCACCTCCTTTTGGAGCAG
CGTGACGTCGGAGAAGGAGCTGGAGTCGCCGGCGAATAACGCGCACGACAAAAGCCGGCGGTCCTCGCCGAAGAGCGACG
GCTATAAAATCAAGTACCGCCGCAACCGGTTGCGTCAAAAGCTGCGGGAGCTGCGCGGCAAGGCGCTCGAGCTCTCAAGA
GAGATGACTGCGTGCAATAACACCGACACGAGCCCGCAGCGCAGCACGCGACTGCGGCAGATGATGAATTGCTACGAGAA
ACAAATCGAGAACGTCTCGAAGCTGCTGTGTAAGCTGTCGGCTTCCATACCGCCGACGACTGACAACGCCGTCGTCGATC
TCGATTACGAGAACGAGCTGGACGAGCGTACGTCAGCCGAGAAAACTGCCGAGAGCGACGACGCGCAGGTGAACGGGATA
TCCAGAAGCAGCATTTCTCCGTCGTCTTCGCCGGGACCGCCCAAACTGTCGCCTCGCTCGCCCATCGACTACGAGAAGGG
TAAATCACCTGACGCTATGAGGAACAGTCCACCAGTGCTGCCCAGAGTTTACATCGCGATCCAACCGACCACTCTGGAGT
GCCTGAAGCAGAATCTGAGCGCCACCAAGAGCTGGCATGCAAACGACAGTTCGTTGGATTCGCCGATCGAGAAGGAAGTC
AAAGTCGACGAAGTGGATCGAACGTTGATTCGCGGCGATGTAACAACGGCGCCGGTTCTATCTCCGATTTCGTCGCCGGA
CTTTGACGGTCCGAGCAACAGCACGACGAAGTGGAACGGCGGGGAGGAGTCCTCGTCGAAACTGAGGAATCTGGAAATTG
CGCAGAAGATTACAGAAGACACCAAAGCGTTTGACGACGCGCAGAAGCACCGACGAGTCACACCGCCGATCTCTTCAAAC
AGTTTTCTAGATTCGTCGATGAATATCGAGCTGGACGAGAGCGACGTTCGCGACACGAAGGAAAGATCTGTCGCTCAAGC
GTGTCTCGACGACGTGACACAGACTTCGGAAATCGCCGCGAGCAAGGCGGTCGCCTGCGAGAAGCAGGAATTGGAACAAG
AATCGAATGAGGCCTTACCTTCTGGTTCGTCGATTGTTGAGGAACCTAGGAAGGTGACGGAATACGGAAACTACGATTCC
ACGGAGAAGCTCAATGGCGAGGGTAGAGCGGCCGGGAGTTCTGTCGCTGCTGCGCAGGAAGCGTCGACGACTGTCGGACG
ACCGCAAGTGCCCGTCGCCAATATGACTAACATTTTGCAGCTGCAGTCGAATTATTACGGCTCGTCCGTCGCGCGGGACA
ACGTTGTCTTCACAAGCGTCATACAGAATTCGAGGGACGCGCAGAAGGTGACGTCAAGTATGAGTCAATCTGTAGCTTTG
GATCCAACAATACCTCTGGGATTCACTCAATCTGCATCCACCGTCAGCAGTTCGAATCAACAATGTGTCGTCCTGCCAAA
TAGCAAGAAAGTTGTTCAAGAGAATACTAACCAGCGCACCGACGGAAGTCGCATTATGACGGAGCAATTTCCCACACTGG
GTAACTGGGTGGCGGAATGTCAAATGGCGGCGAGTGGAGTGTCGAAGAAGCAGAGTACCAAATCGAAATCCAAGCTGCAA
TCCGGTGTAACATTGCCAACCGCGTCAACGGCGGAAGTGGCTCGCATTCCTGGATTGGAAGCGCAAAAGATCCGAGCGAG
TGCGCCGAGTAACGCCGCTCGAAATAACATAGTCAACGTAGCTCCGCAATGGAATACGGAAAGGTGGCAGCGTCAGCAGC
GTCAACAGCAGCTGTACGCGGCGTCGGCGTCATCGGCCGCGCCGCCAGTGAGACCGCCAGGCTTGTGTCCAAATATCTCG
GTTACTCAATTTTATCCACCTAATTATGCGATCGATCCTTACGGCAACGCTTTCGGCTACCACTCGACAATGTGTCCATA
CGGCAATTATCCTTATCATTCTCGTCTGCACGCCACCGCGCCGCCGATTAGCGGCTACCAGATGGGTCCGTTACAGGACA
CACACGCGTCACCGCTCCGCCAGATGCAGCATCTCGACAAGCGTTTTCCCGCACATCTACAGAACGCGGCGACCCGTCAC
TTCGCCACAGATCTCCTCAAGTATCCCGGTGCGTTATCCGCAGGCAGCTATCAGCACACCGCCGCCGGCATGGATTACGA
TCGACTCAGGACGGCGACGTCCACCACGCAGAACGGCACCGCAGGAGCCTGTTTACCATCCCTGTTGTTGCCGCCACATC
CAGCGTTGGCTGCCTCCGCGCAGCAGACTCTGGCGCGCACTTCTCTGGCCAGGTATCCCGCGAGTAACGGCCAGTGTGGT
AGAAATGGAATGATGCCGGACGTCGTCGCGGCGGCGGCGGCTGCCGCGGTATTCGCAGCGGCTTCCTTCGGCCGACAACG
CGATACTTTGCCAACGTACAGAAGAGCCGACACCGAAATAGTGTCCAGAGGCATCGGCGGTGTCATAGATAACGAATCGT
CGCAAATGATCGCGCCGAACAGAGCGGCGAACTGCGAGCGCCTGCCGCAGGAGCAGGTGCAGTCCGTCGACGCCGTTGGA
AGCATCAATGTGGACTCGCGACTTAATAACGGCGGTTACCGTCAGCTGCAGAATTTAATTCTAGACAGATTACCTTACGT
GAAAACGGACGACGCTTATCCCCAACCGTCGGCCATTTACGACAGCACGCAGGAGCCGGCGGTAGCATCCTCGATGTCCA
CATCGACGTACAAGCCCACGCCGATCCGGCCGTCCGGCGGCGCGTTGGCCTCCAAGGAAGGACCAGCCCGCAAGGAGAGT
CGTAGCTGTGAAACGCCTCATCTGGGAAAGGTGAATCGCACTCTGGAGATGATGAATAATCTCGAGTGCTCCAATTGCGG
TCTAATTGGCTCCATGTTCAAGTGCCTGGGCTGTGAGGCGGCCTTCTACTGCGACGAGATGTGCCAAACGCGTCATTGGA
GTATCCACGTAGAGAAGTGTCCTAAAAGGATGCCTAAGTTAAAAAAACTTCTTTGA
PEP:
>LH13514-PA
MRSRDQHADVALKPQKRKSSSKKRSNHALAQSRWPRVAISRSADPREKSDDAKRKLPRFGGCSTVIDTKHSDVIAYRDIV
DLFCESSDASNEGRTTCPQISSSTELDEDSVDVCSTCKDCAECQLQQQQQQQKTAKTEESLMNSRDEELAEHLDYYEGDI
SDEAASTPSTVASMEHEEAPILVDLTSEESKQITWKQTILKQFDDTEESSELSEPRIMIADSSSRLQRTGTGGTLATALR
DRGPCVIPVQPNRSLPIRPAPPIPTRSAASVVMSRKARSILKLSKSMGADVVEVQSDMSPRGSLTNELNEFPFGQQDDKD
DEMMLSRELIDHSDYVLPDMTNVVQIAKEVNSAKRKNDENRDKEYEKEITKDMKKQKKSHEADASHIRDERIKNILKEYS
KTCSGALVDKRGKKSQHLLVRLWDDKRCSSSIVVSTTQPEAEKSKEICNKVVPPLRLKKIVREASISEYRNVEVNADSGS
ESNYRIVTGATPRPELSGYSTTSFWSSVTSEKELESPANNAHDKSRRSSPKSDGYKIKYRRNRLRQKLRELRGKALELSR
EMTACNNTDTSPQRSTRLRQMMNCYEKQIENVSKLLCKLSASIPPTTDNAVVDLDYENELDERTSAEKTAESDDAQVNGI
SRSSISPSSSPGPPKLSPRSPIDYEKGKSPDAMRNSPPVLPRVYIAIQPTTLECLKQNLSATKSWHANDSSLDSPIEKEV
KVDEVDRTLIRGDVTTAPVLSPISSPDFDGPSNSTTKWNGGEESSSKLRNLEIAQKITEDTKAFDDAQKHRRVTPPISSN
SFLDSSMNIELDESDVRDTKERSVAQACLDDVTQTSEIAASKAVACEKQELEQESNEALPSGSSIVEEPRKVTEYGNYDS
TEKLNGEGRAAGSSVAAAQEASTTVGRPQVPVANMTNILQLQSNYYGSSVARDNVVFTSVIQNSRDAQKVTSSMSQSVAL
DPTIPLGFTQSASTVSSSNQQCVVLPNSKKVVQENTNQRTDGSRIMTEQFPTLGNWVAECQMAASGVSKKQSTKSKSKLQ
SGVTLPTASTAEVARIPGLEAQKIRASAPSNAARNNIVNVAPQWNTERWQRQQRQQQLYAASASSAAPPVRPPGLCPNIS
VTQFYPPNYAIDPYGNAFGYHSTMCPYGNYPYHSRLHATAPPISGYQMGPLQDTHASPLRQMQHLDKRFPAHLQNAATRH
FATDLLKYPGALSAGSYQHTAAGMDYDRLRTATSTTQNGTAGACLPSLLLPPHPALAASAQQTLARTSLARYPASNGQCG
RNGMMPDVVAAAAAAAVFAAASFGRQRDTLPTYRRADTEIVSRGIGGVIDNESSQMIAPNRAANCERLPQEQVQSVDAVG
SINVDSRLNNGGYRQLQNLILDRLPYVKTDDAYPQPSAIYDSTQEPAVASSMSTSTYKPTPIRPSGGALASKEGPARKES
RSCETPHLGKVNRTLEMMNNLECSNCGLIGSMFKCLGCEAAFYCDEMCQTRHWSIHVEKCPKRMPKLKKLL
Swiss-ProtTudor domain-containing protein 1
SUPERFAMILYSSF144232  HIT/MYND zinc finger-like superfamily     
PfamPF01753  zf-MYND; MYND finger     
ProSiteProfilesPS50865  ZF_MYND_2; Zinc finger MYND-type profile.     
CoilsCoil
ProSitePatternsPS01360  ZF_MYND_1; Zinc finger MYND-type signature.     

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