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Gene detail [Fasta]

Species Linepithema humile
GeneLH21217
Positionscf7180001005005:1773731..1778510[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/lhum_10/?name=LH21217
sequence mRNA: 
>LH21217-RA
ATGGCGAGCAACGATTTTGATATGGAGTTCTTTGAGCAGAAGCTCCTTACACTGAAGGACTCTCAGGAGTCCATACAAGC
GCTATCTACATGGTGCCTAGAGAGAAGACAGCATCACAAGAAGATTGTTGCTACATGGCTGCAAGTCCTGAGGAAAGTAA
AAGTGGAACATCGACTCACATTGTTCTACTTGGCGAATGATGTTATTCAATACTCAAAACGGAAAAATTCAGAGTTTGTG
GAATCATGGGGCATTACTCTGCAACGTGCAACAACCATGGTTCGTGATGAGAAAGTGAAGCATCGTATACTGAGAATCTT
TAAGATCTGGGATCAGCGGCAAATTTACAGTGAAGAATTTCTTACTGATTTGTCTGGTTTAATTTCGGCTGCACCAAAAA
AGAGATTAGATCCTCAGCCAGCTACACAACCCGATGAATTTCAGGCAGCTCTACTGATCTCTACAATGAGATCTTGTGCG
ACTTTAGAACAAGCGACTGATGCTAGGTTACGAGATCTACGAGAAAGTAATGTAGATATAGAATCTGCAGAAGAATTATG
CGCGTCATTAAAGGACAGAAGACGGGTGGAGGATGCGGAGAAGGAGATTGATTTGGTCGTAGAAAATGTCGAAAATTATG
TTTATTCGTTAGAGGCAGAGATTAGAGAAAGGACGCAAGTGATTGATTTGTTGGAGCAGGCAGATCAGTTTTATGAAACT
CAACGCGGAGAAGTTAAAATAGTGACAAATGCATACCGGAATTTTGGTAGCCGTGTGAAAAATTTGAAGAAGAAGTTAGA
TGAATTATTACCGACGTTTGTCTCGCCGATACCATCACCAGATGTGAACGCACCCTCACCGAGTCCCGACAGTGATATAG
AACTTCCAGGAGATGAAACTCAAGCAACGAATAATCAATCAGCAGTAATTGATGTAGCACCGCCGTCTCTGTATGGTTCA
TACCCTCACGAATATGAGCCAATGCCAGTACCTGTACCTGTGCCTAACTTGGTACAAGGCAACGAATCAGCAGACTTTAC
TAATAATTTCTCCTCTTTCATGGGAGGAAACATGGATTTTGGTAATATGAGAAATTTGTTCAATGAAAGATCAGCAACAC
CTCCTGGAATGTCTCAACAATATAATGAATCTTTAGAGGCAAAACCGATAGAAGTGATCAATATGAGACCCTCAAAGAAT
GAAAACAATAACGCGGATTTCAATATATCTAGTTTCTTGAAAACGGTTCTTCCGACAGCCGACGGAACGCCAGATCAGGG
TGGAATACCGGGTTTGGGCTTGGATGTTTCTGAAAATCAAGTGGGATCGCCGCAACATCCAAACTATAGGCATTCGCCCA
CGTTAGGGCAGCTTCCTGTAACGCCTGTGATGTCTAGAATGATGAATAGCCAGGGTGCACCCATCGGCGGCTTAAATAAT
TGCCAGATGAGTCACAGTACTCCGTTGCCAGTTCGCAATCTGTCCGCTGAATCACACACACCTTCTCCGTATTCCAGTCA
AAATAGTCAGAGTAATATGACCGGTCCGTTTGACGGTCCCGCAAACGCCAATACGGTGAATCCTTTACCTCCTCCGCCTT
TACCGCCGCCAATCTTTCTCGATGACGAGAATTGTTACAACAAGCTACCGCCAAAATTTCCCACATGGACCCCACCAAAC
GAGACTATGAAGGAGTCTGCCAAATGGGACGATAAGGGGAAGAACAGTATGAATCCCGCGTGGTCCGGCGAATGCGACGA
TAAGAACAAGGGCTCGTGGATGGACGGCGATGGGGACAGGTGGGACTCCAATAACGATCCCACGTGGCCCAGCGGTGGCA
GAACGAAAAGCGAAATGCTGTCCGAGACGCCTGAATCGCCACCTATGTACGAAAAAGCCGGCTTTGCCGAGCCGGTGGAG
TACAACGAGCCGCAACCGCAGGAAGCTCTAAATGCTACAGGAGACGTGGATCACAGAGTTATTCCGATTCCGATGACTGT
CGAGAATCAGTTGCCATATCGTTTGATGAAAGCGGCGGACGTCGATCATCGCAATCTCATCAGTCTGACAGGTAGTCCGG
CGAATCACAGCAATCTCGGTGATTCGTCTTTGTCTTTGCCCAATAACAACAATCTCTGGTCTACGGGCGATCAAGATTAT
CGACGACATGTACAACCGGGTGACATTGTTGAAAGCGTTGATATGGAGATGTCGGACGATGAATCGGATAGCAAACCGAA
GGGTAGAGTACTTGTCGACGTGAGGTCGCAGGATCGCGATATGCGCATCGGTGCCCCATCCGGTCCCTCGTCTTCTCATT
TAGACATGGACATGCGCATAATTCCACTTCCTTCCGTACAATTGCCTCGCGGTGGCGTGCAAGATATGCGCTTGATGCAT
TCGGGACCGCCGCCGCCGCCGCTGCCGCCGTTTCAGCGCCAAGATCAGGGTGGCTTCCGGCAGGAACAGCCGGAATTTTC
CCATCGCAAGTCGGTAGATTTTCGCCCGAGTCAACTGAACTTCCGACAGAACAGACCGCCGTCGAATTTTATGCCGAATC
AACAGGACTTTCATCCGAATCAACAAGAATTTCATCAGCTTCATCAGTTCCAGCAGGATTTTCACCAGCTGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAACAGCAACAGCAGCAGCAGCAGCAGCAGGATTTCGAGTATCGCGACAGAGAACACGGTAT
CCGGCCTAAGCAGGATTTTCTGACGGACTCGCCGGGACGCAGGTACTCGCAATCCTCAGATCATCAGCATCAACGCGATA
GTTCGTCTTTTCACAGAAACGAGCGAAACAACCGCTGCGGCGGCCGTGGGTTCACGAGGAACCGCAGAGACAGATACTCG
GACGATCACAATATGAAGCAGCGAAATCTAGCAAATAACCGGAAATCGAGGTCGCAGGATCAGCAGCATCATCAGTCGCC
GCCGGAAATCTTGTCCAACAGTCGGCCGTTGCTGCAGCCACCCGACACTGTTATTATCCTCGATGAAAAGGGCATGCCGA
TCGGCATGCCAGACTTCGATCAGGACAACAACGTGCCGCCCAACATCGCGGAGCCTCAGGAGCACGATTCCGAGAATTGT
CAGGGTTCCGCGATGCCGCAGGCACGCCGAACGTCGCACGATTCCGAGCGCAACCAGTTGCAGCAGGATTATCCACTGGG
CCCTGATCACGAGCAGCGTGCGCCGTCGACCGGGTCGGACGATCAGCCGCTAATGAATCAAGTGACGGTTATTCCAATAA
CGGCGGATAATGCCGGCGACGATGCGCAACAGCAAAACCAGTACGTTCCTATTTCAGAATACGAGGAGCACGTAGAGTCT
GAGCAATCCGATCTCGCGGAGAAGACGAACACGGCCGACAACAGCGAGCCGATCGATCAGGGACAAGAGACGAGTTTCAC
GGAGGACGAACAATTGGACGAGTCGACCGCGTCGGGTAACGAGCTGAAGAAGCTGTCGGCGAACGGCAACTTCGACGAGC
AGAGCCACGAGGAGGGAAGCTCCAGCAAGAAGAGGGCCCTCTTGCCGAACGGACCGCATCCATCGCTCACCGACGCGCCC
GGTCCGAACGGTCCGCTGCTGCACGGCGCGTCCATGACGGAGCCCCATCCCATCATGATGAACGAGTACGACGGGCCGAA
CTTCCGGCCGCGTATCGGCACACCTTTCCCTCCGTGGCGCGGCGGACCCCCACCCAGCAGAGGGGGTAGAGGGGGGTTCA
GAGGTGGACCACCGCCGCGTGGACCGTGGATGGACAGGGGACCGCCGCGCGGACCCGCAGCCGGCAACTTTTCGCCGAGA
GGATTGAAACGGGGCGGCGGACAGTTCCGGGGCGGCGGTGGTTTCAGAGGCCGGGGACGAGGCAGTAATTGGTAG
PEP: 
>LH21217-PA
MASNDFDMEFFEQKLLTLKDSQESIQALSTWCLERRQHHKKIVATWLQVLRKVKVEHRLTLFYLANDVIQYSKRKNSEFV
ESWGITLQRATTMVRDEKVKHRILRIFKIWDQRQIYSEEFLTDLSGLISAAPKKRLDPQPATQPDEFQAALLISTMRSCA
TLEQATDARLRDLRESNVDIESAEELCASLKDRRRVEDAEKEIDLVVENVENYVYSLEAEIRERTQVIDLLEQADQFYET
QRGEVKIVTNAYRNFGSRVKNLKKKLDELLPTFVSPIPSPDVNAPSPSPDSDIELPGDETQATNNQSAVIDVAPPSLYGS
YPHEYEPMPVPVPVPNLVQGNESADFTNNFSSFMGGNMDFGNMRNLFNERSATPPGMSQQYNESLEAKPIEVINMRPSKN
ENNNADFNISSFLKTVLPTADGTPDQGGIPGLGLDVSENQVGSPQHPNYRHSPTLGQLPVTPVMSRMMNSQGAPIGGLNN
CQMSHSTPLPVRNLSAESHTPSPYSSQNSQSNMTGPFDGPANANTVNPLPPPPLPPPIFLDDENCYNKLPPKFPTWTPPN
ETMKESAKWDDKGKNSMNPAWSGECDDKNKGSWMDGDGDRWDSNNDPTWPSGGRTKSEMLSETPESPPMYEKAGFAEPVE
YNEPQPQEALNATGDVDHRVIPIPMTVENQLPYRLMKAADVDHRNLISLTGSPANHSNLGDSSLSLPNNNNLWSTGDQDY
RRHVQPGDIVESVDMEMSDDESDSKPKGRVLVDVRSQDRDMRIGAPSGPSSSHLDMDMRIIPLPSVQLPRGGVQDMRLMH
SGPPPPPLPPFQRQDQGGFRQEQPEFSHRKSVDFRPSQLNFRQNRPPSNFMPNQQDFHPNQQEFHQLHQFQQDFHQLQQQ
QQQQQQQQQQQQQQQQDFEYRDREHGIRPKQDFLTDSPGRRYSQSSDHQHQRDSSSFHRNERNNRCGGRGFTRNRRDRYS
DDHNMKQRNLANNRKSRSQDQQHHQSPPEILSNSRPLLQPPDTVIILDEKGMPIGMPDFDQDNNVPPNIAEPQEHDSENC
QGSAMPQARRTSHDSERNQLQQDYPLGPDHEQRAPSTGSDDQPLMNQVTVIPITADNAGDDAQQQNQYVPISEYEEHVES
EQSDLAEKTNTADNSEPIDQGQETSFTEDEQLDESTASGNELKKLSANGNFDEQSHEEGSSSKKRALLPNGPHPSLTDAP
GPNGPLLHGASMTEPHPIMMNEYDGPNFRPRIGTPFPPWRGGPPPSRGGRGGFRGGPPPRGPWMDRGPPRGPAAGNFSPR
GLKRGGGQFRGGGGFRGRGRGSNW
Swiss-ProtRegulation of nuclear pre-mRNA domain-containing protein 2
SUPERFAMILYSSF48464  ENTH/VHS domain superfamily     
Gene3DG3DSA:1.25.40.90     
PfamPF04818  CTD_bind; RNA polymerase II-binding domain.     
SMARTSM00582     
ProSiteProfilesPS51391  CID; CID domain profile.     
CoilsCoil

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