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Gene detail [Fasta]

Species Linepithema humile
GeneLH20709
Positionscf7180001004992:35378..43605[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/lhum_10/?name=LH20709
sequence mRNA:
>LH20709-RA
ATGCTGGTGAGTAAACAGGCGGAAGGAGAAACGCAGTACACGATGTATAAGCAGCAGCTGCGGCGGCAACAACGAAGAAA
CCGCGGCAGCTGCTGCTGCTTGTACTCGTATACGTTTGTGTGCGGAGACGATCCACCGTCCCTATCGGTAGGGACGGAAG
TTAGTGCTAAATATAAGGGTGCCTTTTGCGAAGCAAAGATTCGTAAAGTGGTGCGATCGGTAAAGTGTCGCGTAACGTAC
AAACCACAAGGTTTGGGAACCGCTACGGTCGCCGATGATCAGATAAAAGGGACTTTAAGAGTGGGCGCGTCCGTCGAAGC
TAGACATGCGGATCGGAAGGAGTTTGTGGAAGCTACGATTAACAAGATTCAGGACTGCAGTCAGTATACTGTAGTGTTTG
ACGATGGGGATATCACAACGTTAAGGAGAAGCGCGCTTTGTCTGAAGAGCGGACGGCATTTCGCGGAGAGTGAAACGTTG
GACCAACTCCCCTTGACTCATCCGGAACACTTTGGAAACCCTGTAATTGGGGGCAGAAGGGGCAGACGATCAAGGCAAGC
ACAGGATGAGAGCAGCGAAGATGAGGACAGTCCGCCACGGGGCACTCGTGATTCCGCTTCCAGCGGTGGTACAAAGGAGG
GGATGGAAACTGAACCGGAGATCGGCAGAGTCGTCTGCGTGGAACTTGGCGATAAGAAGAAGAAGGATAATTGGTTTCCG
GGATTGGTGGTTGCTCCTACCGCTCAAGACACAGTAAGAATACGAGTGAGGGACGACTACTTGGTACGCTCGTTTAAGGA
TGCGAGATATTACACAGTACCTAAGAAGGAAGCCACGGAATTCACAAAAGACTTGGTTAATAAAGTGGAGAACAGTACTC
TGAAGGTTGCGGTAGAGAAGGCACTTTTATTCTTGGAGAAAAATGAATTGCCACCTCACTGGGACAAAGATTCTCTTTTC
GGGCACTCTGTTTCTAGCGGAAATAGCGATTCCGATGGAGAACTTGATTCTGATAGTTCGGACGATGAGCCGCGTGAGGA
AAAAGATCATTTTGTGGCTCAGTTGTATAAATTTATGGATGACCGTGGAACACCAATAAATGTCTGCCCGATGATCGGAT
CCGAAGATATAGATTTGTACAGGCTTTTTCGGGCGGTCTATAAATTAGGCGGCTACAATCGTGTCACGAACCAGAATCAA
TGGAAAATCATAACACGGCGACTTAATTTCTCGATGCAAAATTCGGGACCTATGCACAATCTTGTAAAGCAAGCTTATAA
GAAATTCTTACACTCCTTTGAGGATTTTTATAGAAAGTTAGGCTGCACCATGGTGAATCATCCGCGAGGTAGCACGCGTA
AACAACGTCCTGGGAGAAGTTTGATCCGCGACAAAGACAGAAATACTCCTATTCCGCCGCAAGCACCGGCACAAGTAAAA
AACGAGAAGGATGAGGAGGAGAAGAAAGTCGTTGCGGAAGAAGAGAAGAAAGAGAAGAAGGAGATTAAGAAGGATCAGGT
GAAAGAGGAGGAAAGTGTGAAAGTGAAAAAGAAAGAAGAAAATGAAGGAAATGGTAGCGGGCAAGAGAGCGATGTAAATA
TAGAAGGAGATGTTGAACCGTTGTCTAATAACGAGAAACCACAAAAACCAACCACACAAAATTCCACATTAGCTGTTGCT
TCTAGCGGCACTGCAACCGCGTCGTCCAATCGAGGAAAGTCAAAGAGTAAAGAAGACACGAAGAAGAAGGCGGTTGAGAA
GAAGAAAGTGGAGATCAAGAAGCAAGAGAAGAAAGACGATAAACTTAAGGAGGAAGAGGCTACGAAGACGAGATCCAAAG
CGAAAGATGACACCGTGAGGAACAAGAGTGCTTCCGAAGGAAGGGAAACTCGAACACCGTCCAGAGAAGCGGAAAAGAAA
ACGGTGTCCAAGCAAAGACGCTTAACGGATGAGGAACTGAAGAAACGAGGGAGAAAACGCAAGGAGCACGAGACGGAGAA
ATCGCGCGCGGACGAACAGCTTACGGAGACCGCTCCGTGCTACAAAGGTCCTGTGGAGTGCGGCGATAAATTGAAGGTGT
ATTACGGCCCGACACACGAATCCAAAGTCACTTACGAAGCGAAGGTCATTGAAATAGAGAAAGAAGGCCCGGAACCAATG
TATCTCGTGCACTACACAGGCTGGAATAACAGATACGACGAGTGGATTAAAGCTTCCAGGATCGCGCAGAATTTCACGCA
GACTCAAGGCAGAGTGAAGCGTGTCAAGGCCACTCCTCGGCCTCAGACTCCCAGCACGAACTCGTCCAACAACGTCAACA
ATAATAAATCGAAAAGTGCTTCTAATTCGAGCGCTCATGCGTCGCAAAGCCGTCGCCGAGCGCAGAGCGTCGCCCCTACT
TCCACCAGCGGCGGTCAGTCGACGTCGATATCCGCGAAAGACATTAAGAAGGAAGAAAAGGAGAAAGACAAGGAAACGAC
GCAACCGACTAGATCCACCACGCCACTGTCCATTGCCAGTTCCAGTTCCAGAACCAAGAGTCCTGCCACGCCTGCGAACA
ATCGGCAAACCAGGACAACCAGAAACGCAGAATTGTCGGGTGTGGAACATCGTAGGCGTACCAGGAGAACGTCAGGGCAT
ACAGATATATCCGTTGCGTCGGAAACCGAGGACAGCGAGGACTACGAGTCCGATATCGCCGAGCAAACCGAAGCCGATCA
AGCGAAGACAAGATTGAGAGGCACCGAGGAGAGAAAACGGAAGGAGGCGCGAAGCAGAGCGGAAGAGAGAATTAAAGCGG
AGGACGTGAGCGACGGCGACGACGATAAGGACAATTTGGATGAGCCGCGTAAAGGTAGACGTTTGAGAAGGACGCCTGGG
AAATCCCAAGGCATCAAGTCCGAACCCGATAGCGACCAAGAGGAACAACCGAAAGGTCGAGACTTCGATCTCAACCAGAT
ACGATCCGAGCTGAAAGGTTTCGACAAAGCGGTGAAGTTGGAGTTGGTTAGTGTGGAGCCTGAGTTCAAGGCTGACACCA
AGCCGGACGATAAGGAAAGCACGGCCGCGATTGTAGCGTCACCCAAGTTGGAAAAGACCGTGGAACCTCCAAAAGTGGAG
ACTGTCATTGAGACGAAGGTCGAAAGTACAGAGGACATATATGAGTTTAAGGAACCGGAACCGTTCGAGTTCGAGGTGAG
AAATAAGAGAGACACTAATGAAAAAGACAAGTTGAAGAAGAGAATGTTTGAGGAGGAGCCTAAGAGTCCGAAGAAGAAGC
AGAGAGCGGCGCTGGTGTCGGCGCCGATAGCGAAGGAGACGAAATCGGAGCCGCCGGAGAACGACGGTCGGAAGAAGCCG
CGAAAGTTGTTCAGCAAGCGATCCGACGACGCGAACGAAGCGACGGCGGTAGCTCCATTCAGTAAATCCTTGCAAACCGC
GCCGTCTGTTGCGTGCGAGGAGGCTTTCGATAAATTGTGCGAATCCCCGTCGTTCAACAATCAATTGAAACCTGTGTCCG
TTGCAGAAGAGACTACCAACAAGACATCAAGCGGCTTGAATCTCTTGTTCAGCGATTTACCGTCAGCGGACGACGAAGGT
ACGCGAGATGATTCGGAGGACCGTCTGATAATCTCGGAGACCGAGGTATCGGAGGCGGAGCAGGAGCACGCGTTCACGTC
GTACCAGCAGGAGATTCAGTTTCACAGTGGCGAGCTGACGGGCACGGCGGAGACGACGAACAAGAGTGAAGCGAGCGTCG
CGGTTGAATGCGCGAGAGAAGAGGCATCGGCGGCCAGTACGAGTAGCGGAAACAAATCGACCAATACTCTGGATCACAAA
CAGAACCAAGTGAAGTCGGTGCCTGTCGCAGTCGGGCAATCGCAGTCGGAACTGAGAATACTGGACACCAAGTTACTCGA
TATCGCTCCGGTGCCGTCGCCAATCGTGATCCCACCGGCACCGATAAGCGCGAGACTGCCGGCAACGTCCACGATAGAGG
AGAAGCTGTCCGCCGCCGCGATGGCGTTCCGCAACAAGTCTAAAGATACGAAGAGGACTTTGGACGAGGACGTGTCCGAC
AATATTGTGCGCAAAGTGATCAAAGAGACGAAGAAATTTGACGCTGTTCTGCAACAGAGAAGCAAAGACGCGGATCGCAG
TGTTCTCGCAGTCGAAGTGGACGACGTGAAGCGCGAGCACGACGAAATCGCGATTAAGGAAGAGGATCAGCGTAGAGAGA
TTATACGCGTGGCGATTAAACATAAAGAAGAAGAGCTGCAGCAATTGAAGCCGAAAAAGGAGGCGGAATTGAAGAAGTTT
TCGGAGACCAAGACCGTCGCCGAGCAAAAGACCGGCAAGTTGCACGAGGTCGTGAAAGACGAAAGCTGTCGCGAGAGCTG
TAGGAAGAGCGCAGAGAGCGAAAGTGGTAAAAAATCTGAAGAGGAGTATAAAGCGATCGATCAGAGCGAGAAAGATAGAA
TTGAAAATCGTAAGAAACAAGTCAATCAGGACATCATCGACTCCACGGACAGCAGCGATTCAGAGCAGAGGCTTGTGATA
GACAACGAGGAACCGCAGGACGTTAAACCGCCGACGTCCAATTTCGACGCAAAGTTAAGAGCGGAATTGGATCGCCTGCA
GGACACGCAGGAGAGATATGCAAGGACACAAGTGTCGAAAACTTTGCAGAGTGTTCAGCAGCAGCAGCAGCAAGAATGCA
CGGAGTTTAAGGCTGACGTAACACCAGTTTCGAAAACAGACGAAGAGGGTGAAACGATGAATTCGCTATTGTGCGAAGAG
GAGATTCCTGGCTCTCCGGCACCACCGCCTGAGAGTATCGAGCAAGCCAATATCGGCCCTTCGCACAGCCCGCCGAAGAA
TGAGGCCTCGGAGAGCAGTATAGTGCTGATGGAGATGCCGTTCGCAAGTGCGACCACTTCCGGTCAAAGTACGACGAGCA
GCAGTACCGTCGCTAGTACCCTCAGCATGGCGTTGCCGAAGACCGTCGAGACGTCGATACCGGTTTCTTTGCCGGTGCAA
CAGAACGCACCCTTGAACATGCGCCCGCAGCAGCAGCAACAGCAACAGCAACAGCATCAGCACGTCGTTGCAGCGGCATT
AGAGCAGCCGGCGCAACGACGAGAGAGCAACGAGGCTGCACCGGTAATGGACAACACACCGCCGACCACGCCCGATTCGA
GCATTTCCAACATTTCGGGCTCGCCTAGAGAAGAAAGGACCGGTGGCTCGTCGCCTACTTCCGAGGACAACGTCAAGCTC
AACCGCGACAGCTCGGAGGCGGACAACGACAGCGCCGGCAAGGGCCCGGGCTTCAGCGAAGACGACACTCTGCCCAACTC
GGAGAGCAATCTGGCGGACAGGATTCTCAAGCCGCCCGCTAAACGCTCGATCGACGACATGCAGTCGCCTAAGAAGCGCA
AGAGAAACAGAAAGCACTCGGAGTGCGGTAGCGGTAGTGGTGCCATACCGAAGAAGGCTGGTAGGCAGCAAAACGGTAGG
CACGGTAGATACGGCGTCGGAAGCGACAGCGACGACACCAGCGAGGGCTCGAATCTTTGCAATATAAACGCCGCGCCGAC
GACTCAAGCGAACGTCATCACCAGCGTCGCTGATCTCAATGCCTACTCGTCGAGATCGCCGAGGCCGACCAAGTATAATT
TTTACGTCGAATTAGATCCCGAACTGGACGGTAGTCAGAGGATAGCAGTACTGCAGCAGAAATTGAGCGACTTGCGAAAG
ACTTACAATGCCGTGAAGGTTGAGCTCGCTGCTATAGAAAGACGTCGGAAAAAGTTACGAAGGCGAGAACGAGATGCAAT
GAAAGCAGCTAAAGCAGAAATGCAGCAAGCTTGTTCGTGA
PEP:
>LH20709-PA
MLVSKQAEGETQYTMYKQQLRRQQRRNRGSCCCLYSYTFVCGDDPPSLSVGTEVSAKYKGAFCEAKIRKVVRSVKCRVTY
KPQGLGTATVADDQIKGTLRVGASVEARHADRKEFVEATINKIQDCSQYTVVFDDGDITTLRRSALCLKSGRHFAESETL
DQLPLTHPEHFGNPVIGGRRGRRSRQAQDESSEDEDSPPRGTRDSASSGGTKEGMETEPEIGRVVCVELGDKKKKDNWFP
GLVVAPTAQDTVRIRVRDDYLVRSFKDARYYTVPKKEATEFTKDLVNKVENSTLKVAVEKALLFLEKNELPPHWDKDSLF
GHSVSSGNSDSDGELDSDSSDDEPREEKDHFVAQLYKFMDDRGTPINVCPMIGSEDIDLYRLFRAVYKLGGYNRVTNQNQ
WKIITRRLNFSMQNSGPMHNLVKQAYKKFLHSFEDFYRKLGCTMVNHPRGSTRKQRPGRSLIRDKDRNTPIPPQAPAQVK
NEKDEEEKKVVAEEEKKEKKEIKKDQVKEEESVKVKKKEENEGNGSGQESDVNIEGDVEPLSNNEKPQKPTTQNSTLAVA
SSGTATASSNRGKSKSKEDTKKKAVEKKKVEIKKQEKKDDKLKEEEATKTRSKAKDDTVRNKSASEGRETRTPSREAEKK
TVSKQRRLTDEELKKRGRKRKEHETEKSRADEQLTETAPCYKGPVECGDKLKVYYGPTHESKVTYEAKVIEIEKEGPEPM
YLVHYTGWNNRYDEWIKASRIAQNFTQTQGRVKRVKATPRPQTPSTNSSNNVNNNKSKSASNSSAHASQSRRRAQSVAPT
STSGGQSTSISAKDIKKEEKEKDKETTQPTRSTTPLSIASSSSRTKSPATPANNRQTRTTRNAELSGVEHRRRTRRTSGH
TDISVASETEDSEDYESDIAEQTEADQAKTRLRGTEERKRKEARSRAEERIKAEDVSDGDDDKDNLDEPRKGRRLRRTPG
KSQGIKSEPDSDQEEQPKGRDFDLNQIRSELKGFDKAVKLELVSVEPEFKADTKPDDKESTAAIVASPKLEKTVEPPKVE
TVIETKVESTEDIYEFKEPEPFEFEVRNKRDTNEKDKLKKRMFEEEPKSPKKKQRAALVSAPIAKETKSEPPENDGRKKP
RKLFSKRSDDANEATAVAPFSKSLQTAPSVACEEAFDKLCESPSFNNQLKPVSVAEETTNKTSSGLNLLFSDLPSADDEG
TRDDSEDRLIISETEVSEAEQEHAFTSYQQEIQFHSGELTGTAETTNKSEASVAVECAREEASAASTSSGNKSTNTLDHK
QNQVKSVPVAVGQSQSELRILDTKLLDIAPVPSPIVIPPAPISARLPATSTIEEKLSAAAMAFRNKSKDTKRTLDEDVSD
NIVRKVIKETKKFDAVLQQRSKDADRSVLAVEVDDVKREHDEIAIKEEDQRREIIRVAIKHKEEELQQLKPKKEAELKKF
SETKTVAEQKTGKLHEVVKDESCRESCRKSAESESGKKSEEEYKAIDQSEKDRIENRKKQVNQDIIDSTDSSDSEQRLVI
DNEEPQDVKPPTSNFDAKLRAELDRLQDTQERYARTQVSKTLQSVQQQQQQECTEFKADVTPVSKTDEEGETMNSLLCEE
EIPGSPAPPPESIEQANIGPSHSPPKNEASESSIVLMEMPFASATTSGQSTTSSSTVASTLSMALPKTVETSIPVSLPVQ
QNAPLNMRPQQQQQQQQQHQHVVAAALEQPAQRRESNEAAPVMDNTPPTTPDSSISNISGSPREERTGGSSPTSEDNVKL
NRDSSEADNDSAGKGPGFSEDDTLPNSESNLADRILKPPAKRSIDDMQSPKKRKRNRKHSECGSGSGAIPKKAGRQQNGR
HGRYGVGSDSDDTSEGSNLCNINAAPTTQANVITSVADLNAYSSRSPRPTKYNFYVELDPELDGSQRIAVLQQKLSDLRK
TYNAVKVELAAIERRRKKLRRRERDAMKAAKAEMQQACS
Swiss-ProtAT-rich interactive domain-containing protein 4B
KEGG     K07874  RAB1A; Ras-related protein Rab-1A     
SUPERFAMILYSSF54160  Chromo domain-like superfamily     
Gene3DG3DSA:2.30.30.270     
PfamPF08169  RBB1NT; RBB1NT (NUC162) domain     
SMARTSM01014     
ProSiteProfilesPS51011  ARID; ARID domain profile.     
CoilsCoil

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