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Gene detail [Fasta]

Species Linepithema humile
GeneLH12838
Positionscf7180001004653:2836..9924[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/lhum_10/?name=LH12838
sequence mRNA:
>LH12838-RA
ATGGCTCAGTGTAAACTAACCCCGCGGGAGTTCATTGGTAATGCTTTTTCTCCGCAGATTGCCGTGGTCTGCTCGGTCAC
GGCCGATGCTGCGTGCCAAAAGAATAATCTGTCGTTCGTCGAGTTGCTTCAACCTTTTTGCAAATTAAATACCGAAGGTC
ATTTTAAGGATCCACAAGGAAACACTGTAACGATCAGAAATCTTCGCCTTGCTATACAAGATATTAATACGCGACCACCA
GAACCTTGTCTTGCCAAAAAGATGTTGAACGAAGCAGTCAGTTCTGCTTTGTGTGAACGTACAACCACTGTTTGCATTGG
TGCAACTGAATTAGATATTCCCATTTCTGTTCCCTGGTTTGAAGCATGGAGAGAAACTTTTCTAAGTGTCCAGTTTCCAT
CAGATCATGAATTCACAAAGCATCTACTTGGATGCATGATAGTTGTTTCTACAGCTGAAGATAATCCATTAGAAAAAATA
CAGACTATGGGAGCACAATTGCATCAAAGTATACCAGGAAAATTGCCTAAATGGTTCAATAATAATGCTCTTAGATATTA
TATCTTAGTTCATGATGCTATTCAGGACGATAGAAACAAAGCAGAATTAGTTTTTACTGAGATGAAGACTATTTACGGTG
CTAACAATTGTTTTTTATTACAAATGAATTCGAGACCGCCTGGTCTTTCCGATGATAATACACACTTGCCAGATCCTTGG
AGCCAATTTTTGATTAAACATTCAGAATTGTCTAGCAGTGAACAAAACAGCTCTCCTCGTACACCTGCGGATACAGGCGG
AGTATCCGCTATGCCGAGCGAGCTGACTACTGAGTCTGACAAAACGAGCCAAGCGGGGACACCGGTAATGCCACACAACT
GTATTGCATTGTCATCTCCCGATTTACCACAATTAGTATCTGCAATTGACGCAATAAATCTCTCTTCTGAAATATCTGAA
TTGACGAATACGCATTTAGAAGTTGGACAAGAAGCGGTTCCAGTTACAATACATCCACTCAGTCCAGACAATGAAAAATC
GCAAAGTTTTATTTCTGCAACTAACGTTAAAAGTCAATCTGTTCTAACTAGTTCGCCAATAAATACAAATGTTTGGGCGG
ATTCTCCGAATTATGTGGTTGCTCAACACGGTGCTCGTCTTTCCACCCAAGATTTGGAAAGATTACGCACGTTGATAACG
GAATTCTGTTTGCGAAGTTTGTTGCCTTATGTAGAAAAGCAGATTGGCCTATTGAACGATGTGATCTCGAACAAAAAAGG
AGTCAGCAGGTCATTATTTAGCGCTACAAGAAGATGGTTTGGTACAAATAAGCCAGGTGTACCTGGTTCGACACCATCCA
ATGCTGTAATTTATACAGCAGAATCGCCAGAGTTGCAATTACGACGTTTAGGCGATCTGTGTTTCATGTTTGGCCACTAT
TCGCTCGCATATCAGGTGTATCACAGTGCTAAGCGCGACTTTGCAGCTGATCAAGCATGGGTATATTATGCGGGTGCTCT
GGAGATGGCTGCTTTAAGCGCCTTTATGCAAGGGGAGACAAACAGGAAAACTATCGAGTACATGGACGATGCGATACTGA
CTTACGCGAACAGCTGTAAGATGCCTCAGTTCGCAACAAGAGCTACTCTGCTTAGCGCCGAGTGTTTAAAGGGTCGGGGT
TTATACGGCGAAGCTGCGAAACAACTGATACGAATGACCAGCGAGGATTCAGATTTACGTTCGGCTTTGTTACTGGAGCA
AGCTGCTTATTGCTTTATCGGACCGAAGATGATGCGCAAATATGCCTTCCATGCGGTTTTAGCTGGACATAGATTCTCGA
AGGCCGGACAAAGAAAACACTCGCTGAGATGTTATCAACAAGCTTATCAGGTGTACTACAAAAGAGGTTGGTCTTTGGCT
GAAGATCACATTCATTTCACAATCGGCAGGCAGGCTGCGTCCCTAAAACAAATTTCCGAGGCGGTAAAGGCCTTTGAAAA
ATTACTTAACGCTTCCAGCAAACAACATGCTTTACAACAAGCTGCGTTTTTACGAGAATTTTTACATACTTGTAATTTAT
TGTTTCAGGAAAGTGGTGCGACTTGCAAAGAACTTCCTATTTTACCTTTGCCCTTATTAAATAGCGACAATATTAAAGTA
TTATACGGTCCGTTGAGTAAACAAACTGAAAGCAATATTCCAGCGAGTCACATTACGTTCAGTACCGAAGAGACGGATGA
TGCGAAATGGTTCAAAATGGAGGAACTCTTGATAACTGAGGCACAGGGATCTCTACCCATGATATTTAAGCCGACAGTCG
CATTGTATTCTAGAACAAGTAATAATACTGTAAAGCCAAATGCAGTTTTAGATGAACCAGTGCATTATTTTATCGAATTG
CACAATCCGCTACATGTTCCGCTACCGTTGTCAGATATGACTTTATTGTGGTCGTTCACTTGCAACAATGAAGTTATTAC
GAATGAAATAAAAACGAGCAACAGTTCAAGTCCGGTCGACTCGGATGTTATAGATGCAATTTTGTTGCAACCAGTTTGCA
AGCAAAATATCGTGTTATCTCTTACACCCAGGCGTGTAGGGGAGTTGGAGATTATAGGTATAAGTTATAAATTGTCCAAT
TCAGTACAGACAATAAGTGATCCACCGATTGCTAATTCAACCACCGTTGTCGCCGGGAAAAGATTGTTCGAAATTACGCC
GCCAAAATTGAAAAATATCAAAGAAAAGCCTGGCATGATCACATACGGAAAAGATTATAGATTGCAAATGAATGTAATAG
AAAAGGCACCATTTATGCAGATATTCTTTTCTAAACTGTCACCAGAGATGCTATGCGGTGAAATACAAAAGATAGAAGTC
ACATTGGAAAATGTAGGCAACGCATCATTGACGAATATATGCATTGCATCCACGGATGCTAAACTTTTCACATTGAAAAA
CACATCAGACTTTGACAGAAACGAAGATTCAATGTTGAAAAAGAGTAGATCAGTCACGAAGGTAATATTACCAGTCTCTA
AAAATGGTATATTAAATGTGGGTGAAATTCATAAACTGCCGCTTTGGGTGCAAGCACCTCGTGAGAAGGGCACTCACAGA
TTAGATTTGCTTTTCTATTATGAAAATGCCGAGTCAAGAATCACATTGAAACACCGGTTGTGCCGACACACCTGGCAATT
AACGGTGTTGGATTCAATTCAAATTACCGCGATTGCTGCTAGAAGCGGATTGTTTAAAAACGACTCGCCAACGTTAAATT
TAATAATGTCTGTTAAGAATACGAATCAGGTTCACGATCCATCCATAAACGAAATTATGCTATCCAAAGTATCGCTTCAA
AGCGTACTATGGTTCGCATTTCATTCTTCTGTTCCATCATCAAGTATAAAAGTGCAGCCTCAAGAAGTGTTCCATCTGAT
GCTGAAGCTGAAGAAAAAAACTGGTAGCGACTTGGCCATTTCCGATGTATCCTTGATTTCTGACGAAGGCAATGCTATGT
TGATCAACGATTATCCATTTATTGATTTTGTACAGAAACGTCACATTCAACCGTTGGATATAAATGAAAACGTAAACGAT
ATACAACAATTTCAACCACAACAAAATATCGAGCATAACTCTATATCGGATATCATGGCATTAAATTCTACATTAATCGT
TAAGTGGTATGCCAATGTGACGGAAAGCGGCATAGTCACTCGGAAAGCGGTTGGACAACATCACCTCGAACTTGAGCATT
TGAACAAAATATACAAACATCTGAGAGAATCACGTACTGAGCGTAATGAATACGGTACACGTTTAAAAATCTTCGGGCCG
GACCGAAATGTACCTAATATGGTAACGGTCCCTGTCAAAGATCCTGCGTGGGAAGCAGAATGCTTGAAAAGTCTAATTTC
CTTTTCTCTAAATCATCAGAAACAAGTAACACACGATTTTCAGCAGAACCGATTGTGCATTATTCCTGTAATAATGTATT
TACAAAATCACTCAGAGATGCGACTCGATGTTAAAATAAATACAATAGGCACTAGTAGTGAAACTCATCTTCCAAACATA
AAATCCCAACTGTACTTGCCGCAAGCTTCGGCGTACTATAAGTATGCCGGCCATACGTCAGTTTATTCTAACGTTGAAGC
GCATACAAATAGTACCGTAAAGTTACACGCTGTATTACTCAGTCCAGGATCGTACGACTTAGCAGCGCGAATAGAAATCT
CCGTGAAAGTTGTAAATAGCAAGGAGTATATTGTTCAGAAAGGCAAAATGGAGAGTATATGTATTATTAACGACGACAGT
TTGCCAAAAAAGAGGAGAAAGTATTGGAAACTTTATAGATAA
PEP:
>LH12838-PA
MAQCKLTPREFIGNAFSPQIAVVCSVTADAACQKNNLSFVELLQPFCKLNTEGHFKDPQGNTVTIRNLRLAIQDINTRPP
EPCLAKKMLNEAVSSALCERTTTVCIGATELDIPISVPWFEAWRETFLSVQFPSDHEFTKHLLGCMIVVSTAEDNPLEKI
QTMGAQLHQSIPGKLPKWFNNNALRYYILVHDAIQDDRNKAELVFTEMKTIYGANNCFLLQMNSRPPGLSDDNTHLPDPW
SQFLIKHSELSSSEQNSSPRTPADTGGVSAMPSELTTESDKTSQAGTPVMPHNCIALSSPDLPQLVSAIDAINLSSEISE
LTNTHLEVGQEAVPVTIHPLSPDNEKSQSFISATNVKSQSVLTSSPINTNVWADSPNYVVAQHGARLSTQDLERLRTLIT
EFCLRSLLPYVEKQIGLLNDVISNKKGVSRSLFSATRRWFGTNKPGVPGSTPSNAVIYTAESPELQLRRLGDLCFMFGHY
SLAYQVYHSAKRDFAADQAWVYYAGALEMAALSAFMQGETNRKTIEYMDDAILTYANSCKMPQFATRATLLSAECLKGRG
LYGEAAKQLIRMTSEDSDLRSALLLEQAAYCFIGPKMMRKYAFHAVLAGHRFSKAGQRKHSLRCYQQAYQVYYKRGWSLA
EDHIHFTIGRQAASLKQISEAVKAFEKLLNASSKQHALQQAAFLREFLHTCNLLFQESGATCKELPILPLPLLNSDNIKV
LYGPLSKQTESNIPASHITFSTEETDDAKWFKMEELLITEAQGSLPMIFKPTVALYSRTSNNTVKPNAVLDEPVHYFIEL
HNPLHVPLPLSDMTLLWSFTCNNEVITNEIKTSNSSSPVDSDVIDAILLQPVCKQNIVLSLTPRRVGELEIIGISYKLSN
SVQTISDPPIANSTTVVAGKRLFEITPPKLKNIKEKPGMITYGKDYRLQMNVIEKAPFMQIFFSKLSPEMLCGEIQKIEV
TLENVGNASLTNICIASTDAKLFTLKNTSDFDRNEDSMLKKSRSVTKVILPVSKNGILNVGEIHKLPLWVQAPREKGTHR
LDLLFYYENAESRITLKHRLCRHTWQLTVLDSIQITAIAARSGLFKNDSPTLNLIMSVKNTNQVHDPSINEIMLSKVSLQ
SVLWFAFHSSVPSSSIKVQPQEVFHLMLKLKKKTGSDLAISDVSLISDEGNAMLINDYPFIDFVQKRHIQPLDINENVND
IQQFQPQQNIEHNSISDIMALNSTLIVKWYANVTESGIVTRKAVGQHHLELEHLNKIYKHLRESRTERNEYGTRLKIFGP
DRNVPNMVTVPVKDPAWEAECLKSLISFSLNHQKQVTHDFQQNRLCIIPVIMYLQNHSEMRLDVKINTIGTSSETHLPNI
KSQLYLPQASAYYKYAGHTSVYSNVEAHTNSTVKLHAVLLSPGSYDLAARIEISVKVVNSKEYIVQKGKMESICIINDDS
LPKKRRKYWKLYR
Swiss-ProtTrafficking protein particle complex subunit 8
SUPERFAMILYSSF48452  TPR-like superfamily     
Gene3DG3DSA:1.25.40.10     
PfamPF12739  TRAPPC-Trs85; ER-Golgi trafficking TRAPP I complex 85 kDa subunit     

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