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Gene detail [Fasta]

Species Linepithema humile
GeneLH16235
Positionscf7180001004905:557263..565958[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/lhum_10/?name=LH16235
sequence mRNA:
>LH16235-RA
ATGGAGAATAAATGCAGTGAACTTGGGTTACAAACAGAATGGGTTACTGAAGAGTTTTGCAATAAGATAAATGCATCTAA
AAGTGATGTATTTATCATAGAAGAATTCAAGGGTGATTTGTTTGAAAAGTTGAAAAATTTCAAATGCTCAATAGTATCAT
CAAAGTGCTTGCTTATTTGCCTTATAAATGGAGAATCGATTCCAGAAGGAACAAGTCCAATATATACAACAGCTATGAGA
GGAATGTATGTTTGTGCATCAGGTTTAAGTTCTGAAAGCAAGCATCAGCTACAACAACAGATTGAATATATGGGAGGTTT
TTTTACAAAACATTTAAGACATTCTGTCACACATTTAGTAGCAGATTCTGTGATGTCTGCAAAGTATGAGGCTGCTATAA
AAATGAATATATCAATTATGACAAAGAAATGGGTAGAAGCTGTCTGGGAAGCAAACTTGAAGCAAGTAATTAAGGCAAAT
GATAAAATTTTTGATGAATACAAATGCCCAGTTTTTATGAATCTGATAGTTACGTCAACAAATCTTCCCAAGCGTCAGAA
AGAAGAAATTAAACGTCTCATACATGACCATGGAGGAACATTTATGGGTCCTCTCGATGGATCAAAGGTTCGAGTGGTTG
TAACTTCCGAAAATGGCCCTTTAAGCGATAAGTTGAAGTATGCAATGAATAATGACATTGCCTGTTTAAAACCAGATTGG
GTATACGAAAGTATTAAAATAGGTTACGCTTTACCTTTCCGTGATTTTATTATCAAATCTAACAAAGCATGTTCAACGCC
GGAGAAGCTAAATAGTCGAGAAACGCTTAATTTTTCCGAAATCAGCATTATACCACATGATAAAGCTTCGAATAATTACA
TAAACGAAAGTTTCAGTACGACACCAAACTCCTCTATTATCTCTGTGACCGGATATATCCGTAATTTCTATCATGCAGCG
GCTGCGTTACATGTTTTGGATCGACTTAATCTCAGCGAAGTGAAATCCGCTGGACCATTTCTGGACGGATGTAATATTTA
CCTCGCAGGATTCGCGGCAAACGTTCGAGACAAATTGAACAGAATACTAAACGTCGGTGGTGCGACGCGTCTCGATGAAA
TATCGGATGCTGTCACGCACGTGATCGTCGGCGACGAGAATAAAGCATCCGCGGAGCTAAAAGTGATGAAATCGAGAGGT
TTATGGTACACTAATAAAAAATTCATATTTTTGCCAAAAGAATCATCTCGCATGAAGAGTTTGATTATAAATTTCATTTG
GTTTCACATTCCTTACATATTGAGCATAAACTGGCTGGAGGAGAGCATCAAATTTAAACGGCCGGCTTCAGAAGAACTTT
TTCTATTTGAAACAAAAGGAGCAGTACTTAAAAAGAATACTGAAACACTCGCTTCTCCGCTCAGTAAAAAGAATTTACAA
ATGTTGCAACAACCGAGGAGACCTCCTGTTCCACTTTTCAATTTGGATGAAGAACTCGCATCCAAGAATGAAGAACAGCA
GCCTAATCTTGTGCAGCAATATCTGCAGGAAACTAGTGAACGTAAAAGCACAATGCATAATCTTGCGAAGACGCCCGTTT
TGGAGGATAATTTGAGCCGAAGTAATTTGAATAACACGAAAGATGTACGTATTAGCCAGATTCGTTTATCAAATATCATG
CAGAATAAGAACATGGAAAACGACAGTGATGTGCCTCTCAGCCAAAGCTGCAAGATAAACGAGGATTTACTTAAAGATAA
TGAAAGCGCAAGAAAGCGCATGAATTTTTCTCAATGCAATAACAAAACTATACATGCAGGGTTGACGTTTGCTGTGATCG
GCTTTAACAATGACGACAATCACGTGGAGGAGACGATCGTGATGTGTGGTGGACGCGTGGTTTCTAAAAAATATAGTGGT
ATTCCAGATTACGGCGTTGTGCCTGTGCTCGGAGCGCCTTTGAAGCACACAGTCAACGAAATCGTAACCGATTTGTTTAT
CGAAGATTGCATAAATCAGGATCAAATTGTCGATATTATGTATTACCACAGGCCATTATCTATCAGAAAACCATGTAATC
CTCTATCAGGATGTGTCATTACGATGAGTATGTATACAGGGACTGAGCGAGTATATCTCTTAACATTGGCCACGAAACTT
GGTGCTATATGTCAAGATATGTTTGCACGGATCGCTAATGTGGAGAAGCATACACGCGGCAATACGCATCTAGTCTGCCC
GACGCCAGAAGGAAATAAATACAATGCATCGGTAAGATGGAAATTGCCGGCTGTCACTGCCGACTGGTTAAAAAGCTGTG
CGGAGCAATTAACGCTTGTAGATGAAACTGAATTTCTTGTCGGGGAAACAATAGCGCCTGATAGATCAAATTCTATCAAT
GGGACAAGTTTTCTTAACAAAGATGAAGAAAATAGAACGAGCTTAGCGGAGAAAGCCACAACAAGAATTCTGCTTACACC
GAAACGTCACTTATCTCAAGTCAAAAACCAAGACACTCTGTCTCCCGAAACCCCATTGATAAACAAGAGACTCAATCTCA
TGACGAGTCAGGGATCACAGTCGCCGTTTCATATTTCTACACCTGAGACTCCATATGGACAAGTCTTTGAACCCAATCCT
TCACCGAACACGCGAAAGCAGTGGATCAAATTTGCGGATAATTTTCCAGATTTACGAGTATCGGAACCGCCACTTAAACG
ACGTTTACCCAGCACTCCGCTTTCAGAATTGAAAAATCAACTTTGGGGAAAACTGTTGGATGCAGCTCAATTAGAATCGG
AAAACGCAAGCGAAAGAGCTGAAAAAGTTGAAAGAGTCGAAAGAGTTGAAACAGCTGAAGTTGCGGAAAGAGATGATGAA
GTCAACAATCAATCCAACAAAGATCCATCAACGCCTACGTCCAGAAGTCAAAAGCTCGAATTTGGCGAAAACAATAGCCC
AATATCAACTAAACCGAATAACGAGATAAACATTCAATTTGGTCTTATGATAAACAGGCAAATAGCGCAATTGGATCAAA
TGCTTCAACGGACATCGAGTACTCCTGAAAACAGGTACTCTCTATCCGGAGAAAATGCAAAGAAGTACAATGTTGAAGCT
TCTGATCACATACAGAAATGTGAGTACTTACGCATAATAAAGGATTCGCAACCTATCGACGCTATCGTGTGGGAAGATCC
GGATCATCCAAAACAGCTAACGATACAAATAAACAAGAATGATCACAGCAGTATGGATGTCGAAGAATGTATCGAAGCCG
TTACGGAATACGAAGATGAACCACAGATAACGCGAAAGTTTATGCTGTCGGGTATAAAGGATAGGAACATCTATGAACAA
GTGATAAAACAGCTGGGCGGAGATGTATCGACGTGCACGAATTTCGATAATAGTGCTACACATCTTTTATGCATCAGACC
ATCTAGAAACGAGAAAATGCTTAGTAGTATAGCTGCTGGAAAATGGGTCCTACATTGCTCATATTTGCGGGATTCCGATC
GAGCAGGCAAATTCCTCAATGTTGAACACTGGTTAGGAATTTTGGATCAGTCTTTTTCGATAAATCGAAAATCGAGGAAC
ATCATAATAATAGAAGAGGAATATGAGTGGGGAAACCCACAGAGTAAAGATGTGATTCCGAAACCGAGCGGCGAGATCGA
ACAGGCGATCGCGGCTGCAGCTTACAAGTGGCGAGTGAAGTTACATCAGGAACCAGACGGTCCATTTTTCGGTATGGTGG
CTTTATTAATGACTTCCGAGGAGAAATATGATCAGTTTAAGAGACTAATCGAAGCCGGCGGTGGTTTAGTTACGCAAGCA
AGGCCACCTTACGACACTAGTCCTTCCGGACATAGGATCACACACTGCTTCGTCAATGTGAAACAGATGAACCAGCCCAT
AGACTGGGCTATGCTGGCCAGTAAAGGTATCCTCTGTTTCTTGCCGCAGTACCTTAGCGATTACCTGACGACAGTAACCC
CGCTCAATCCGCGGGATTGCGTGGTGCCAGAATTTAAGAAATATCTCACGCTACTTCCAAAGTAG
PEP:
>LH16235-PA
MENKCSELGLQTEWVTEEFCNKINASKSDVFIIEEFKGDLFEKLKNFKCSIVSSKCLLICLINGESIPEGTSPIYTTAMR
GMYVCASGLSSESKHQLQQQIEYMGGFFTKHLRHSVTHLVADSVMSAKYEAAIKMNISIMTKKWVEAVWEANLKQVIKAN
DKIFDEYKCPVFMNLIVTSTNLPKRQKEEIKRLIHDHGGTFMGPLDGSKVRVVVTSENGPLSDKLKYAMNNDIACLKPDW
VYESIKIGYALPFRDFIIKSNKACSTPEKLNSRETLNFSEISIIPHDKASNNYINESFSTTPNSSIISVTGYIRNFYHAA
AALHVLDRLNLSEVKSAGPFLDGCNIYLAGFAANVRDKLNRILNVGGATRLDEISDAVTHVIVGDENKASAELKVMKSRG
LWYTNKKFIFLPKESSRMKSLIINFIWFHIPYILSINWLEESIKFKRPASEELFLFETKGAVLKKNTETLASPLSKKNLQ
MLQQPRRPPVPLFNLDEELASKNEEQQPNLVQQYLQETSERKSTMHNLAKTPVLEDNLSRSNLNNTKDVRISQIRLSNIM
QNKNMENDSDVPLSQSCKINEDLLKDNESARKRMNFSQCNNKTIHAGLTFAVIGFNNDDNHVEETIVMCGGRVVSKKYSG
IPDYGVVPVLGAPLKHTVNEIVTDLFIEDCINQDQIVDIMYYHRPLSIRKPCNPLSGCVITMSMYTGTERVYLLTLATKL
GAICQDMFARIANVEKHTRGNTHLVCPTPEGNKYNASVRWKLPAVTADWLKSCAEQLTLVDETEFLVGETIAPDRSNSIN
GTSFLNKDEENRTSLAEKATTRILLTPKRHLSQVKNQDTLSPETPLINKRLNLMTSQGSQSPFHISTPETPYGQVFEPNP
SPNTRKQWIKFADNFPDLRVSEPPLKRRLPSTPLSELKNQLWGKLLDAAQLESENASERAEKVERVERVETAEVAERDDE
VNNQSNKDPSTPTSRSQKLEFGENNSPISTKPNNEINIQFGLMINRQIAQLDQMLQRTSSTPENRYSLSGENAKKYNVEA
SDHIQKCEYLRIIKDSQPIDAIVWEDPDHPKQLTIQINKNDHSSMDVEECIEAVTEYEDEPQITRKFMLSGIKDRNIYEQ
VIKQLGGDVSTCTNFDNSATHLLCIRPSRNEKMLSSIAAGKWVLHCSYLRDSDRAGKFLNVEHWLGILDQSFSINRKSRN
IIIIEEEYEWGNPQSKDVIPKPSGEIEQAIAAAAYKWRVKLHQEPDGPFFGMVALLMTSEEKYDQFKRLIEAGGGLVTQA
RPPYDTSPSGHRITHCFVNVKQMNQPIDWAMLASKGILCFLPQYLSDYLTTVTPLNPRDCVVPEFKKYLTLLPK
Swiss-ProtDNA topoisomerase 2-binding protein 1-A
KEGG     K10728     
SUPERFAMILYSSF52113  BRCT domain superfamily     
Gene3DG3DSA:3.40.50.10190     
PfamPF12738  PTCB-BRCT; twin BRCT domain     
SMARTSM00292     
ProSiteProfilesPS50172  BRCT; BRCT domain profile.     
CoilsCoil
OrthologiGroup-00890    DNA topoisomerase 2-binding protein 1-A      

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