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Gene detail [Fasta]

Species Linepithema humile
GeneLH20211
Positionscf7180001004985:2336001..2349214[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/lhum_10/?name=LH20211
sequence mRNA:
>LH20211-RA
AAGCGTTTGTCGTATACGTATATGTAAGCGAGGGTATATCGTATATCGAGTGACGGCACGCCGAAACCTTGTCCGCACGG
ACTAAGTGAGCGTCGCCGCGACGGCGTTGATGCTACATCGTCCGGCCAGTGTTTCCTCGCGCTTGAGAAAACGGGAGTGA
AGTGAAAGGGAGAAAAGTGTAGGAAAAACGAATCGCGTCGCCGTCGCCGTGCTCATTGTCGTCCTCGAGCGGGATCACGA
ATACCGCGCGTAGCGGCGGGCTTTGGCGATCGTCGTCGTGATTTTTCTATCTTGACGTCGGAGCCGGGGAGCGTGTTTAT
TGCGGAATGGCGTCAGACGAGGAGGTGGACGAGAACTATGCAGGAGAGGATGACATGGATGAGACTGGGGGACAGGTATC
AAATGTTGGTCAGCCAGTAGATGGCTCATCAGATGCTGAAGAATCTCAGAGATTGGAAGAGGACGATGATTATGAACCAG
AAGAGCGGAAAAAGAAGAAAGGAAAGAAGCGAAAAGCACGTAGTGAGGATAAGAAAGGAAAGAAAAAGAAGAAAAAGAAA
AAATCCGATTCTGGGGATGAAAGCGACTTTGGTGGCGGTGAAGCAGCAGCAGGTGACGCGGCTGGTGAGGACAGTGACTA
TGCGGTCAATAGGAAGAGCAGGAAGTCATCCTCCAGAAAATCCTCCAGTCACAATGCACCACCGACCACTCAGAGCCAAG
AGCCTACGACAGGCATGCCCACAATCGAAGAAGTGTGCAACACATTCGGCTTAACGGACGTACAAATTGAATATTCTGAC
GCCGATTTCCAAAACTTAACGACGTACAAACTATTTCAACAACACGTCAGACCGCTCTTGGCAAAAGAAAATCCAAAAGT
TCCAATGTCGAAGCTTATGATGTTGGTGGCAGCCAAGTGGCGCGATTTCTCCGAATTAAATCCACACACGCAACCGGATG
CGGATGTCTCATCCACCAACGTGGATGATGATAACAGAAACGCCCGAGCAAATCGAAGTGGTGCTATACAAGAACCTGAG
GATGAAGAGGAAGATGACGAAGACAGTGATCGGAAGAAGAAATCGCGAGGTTCAAGAGCGAAGAAAGGGAAAAAGGCGTC
GAAAGTACCGACGCTTAAGATTAAGCTTGGGAAACGCAAGCGGGGAAGCTCAGACGAGGAGGCGGAGGGTAGCGCCGCGG
GCTCTGCGGCCGATTCCGACATGGAATTCGAGCAAATGTTGGCCGATGCGGAGGAGACTCCCGGTGTCGATGGTAACAAG
GGTAACGTCGAGGAGGCTGGTGTCGAACCACCGGCCGAGCCGCCAGTTCGTAGAAAGGCGAAGACAAAAATCGGCAACAA
GACCAAGAAAAAGAAGAAGACAAAGACTACTTCTAAGTTTCCGGATGGAGAGGAAGGTCTCCAGACTGACCATCAGGATT
ACTGCGAAGTGTGTCAGCAAGGTGGAGAGATCATATTGTGCGATACGTGTCCTAGAGCGTATCATTTAGTGTGCCTGGAG
CCTGAATTGGAAGAAACGCCCGAAGGAAAATGGAGTTGTGCCCATTGCGAAGGAGAAGGTATTGCAGGAGCAGCAGAGGA
TGACGACGAACATATGGAATTCTGCAGAGTGTGCAAGGATGGCGGAGAATTGTTGTGTTGCGACAGTTGCACGAGTGCGT
ATCACACGCATTGCTTGAATCCTCCATTATCGGAGATTCCCGATGGCGATTGGAAATGCCCGCGATGTTCTTGTCCGCCT
TTGAGAGGGAGAGTGGCAAAGATATTAACGTGGAGATGGAAAGAATGTTCCGACACACCGTCGGAAGAGCCTTCTACAAG
CAAGGCTGCACCTAAGCAGAGAAAAATACGCGAGTTCTTCGTGAAGTGGGCAGATATGTCCTACTGGCACTGTGACTGGA
TCACAGAATTACAACTTGACGTATTCCACCCACTCATGTTTAGGAATTATTATCGTAAATATGACATGGACGATCCACCA
AAATTGGAGGAACCGTTGGACGAGAGCGATACTCGTGTAAAGCGTTTGAAGGAGCAGCCCGGTGCCACCAACAGGGATGA
GTACAACTTGGAAGAACGTTTCTATCGTTACGGCGTTCGTCCGGAATGGCTGGTGGTTCACAGAGTGATCAATCATCGAT
TGCAAAGAGACGGCAGAGCCACGTATCTCGTCAAGTGGCGGGAACTCGGCTACGATCAGGCAACATGGGAGGACGAGCAC
GCGGACATCCCCGGCTTGAAGCAGGCCATAGAATATTATTTAGATTTGAGAGCCGCTAACTGTTGCGACGGTACTACGTC
ACGTAAAGGCAAAAAGGGTAAAGGGAAGAAATCGAAAACGCGCGAGCTCATCGACGATGAAGAAAGGACTCCAAAGCGGT
ACACGCCACCGCCAGACAAACCTACGACAGATCTCAAGAAGAAGTACGAAAGGCAACCAGATTACTTGGATCAAACTGGA
ATGCAGTTACATCCTTATCAATTGGAGGCAATTTTTACATTACATTTTCTCAATTCGCAGGGTTTAAACTGGTTGAGATA
TTCATGGGGCCAAGGCATAGACACGATTCTGGCCGACGAAATGGGTTTGGGAAAAACTATTCAAACTATCACATTCTTAT
ATTCCTTGTACAAGGAAGGCCACTGTAAAGGGCCTTTCCTGGTTTCCGTTCCCTTGTCAACTATTATTAACTGGGAGCGT
GAATTTGAAACTTGGGCGCCTGACTTCTATTGTGTTACTTATGTGGGCGACAAAGACAGTCGTATTGTGATTCGTGAAAA
CGAATTGTCGTTCGAGGAAGGTGCTGTACGTAGCGGACGCGCCTCCAAAATTCGTTCGTCTTCAATTAAGTTTAACGTTT
TGCTTACGAGTTACGAGCTTATATCCATCGATTCGGCATGCCTAGGCTCCATCGATTGGGCTGTTTTAGTTGTAGATGAA
GCTCACAGATTGAAATCCAATCAGTCCAAGTTCTTCAGATTATTAGCTTCTTACAATATCGCGTATAAACTTTTACTGAC
TGGCACGCCACTGCAGAATAATTTGGAGGAACTGTTCCACTTATTGAATTTCTTATGCCGCGATAAATTCAACGATTTGG
CAGCGTTCCAAAATGAATTCGCTGATATCTCAAAGGAAGAGCAGGTTAAAAAACTGCACGAAATGCTTGGACCGCATATG
TTGAGGAGATTGAAAGCTGATGTATTGAAGAATATGCCTAGCAAATCTGAATTTATCGTACGCGTCGAATTATCACCAAT
GCAGAAGAAGTATTACAAATATATATTAACGAGGAACTTCGAAGCCTTGAATCCGAAGGGAGGCGGCCAGCAAGTGTCGC
TGTTAAATATAATGATGGATCTCAAGAAATGCTGCAATCATCCATATTTGTTTCCTGCCGCGTCACAAGAAGCACCAACC
GGACCAAATGGAAGTTACGAGACTTCAGCGTTGATTAAAGCGGCTGGCAAATTGGTTCTGTTGAGCAAGATGCTTAAGAA
GCTGCGAGACGACGGACATCGAGTTCTTATATTTTCTCAGATGACCAAGATGTTGGATATTCTTGAAGATTATTTGGAGG
GCGAGGGATACAAGTATGAGAGAATAGACGGCAATATAACCGGCGCGCAACGTCAAGAGGCCATCGACAGATTTAACGCT
CCCGGCAAGAATTTAATTACAGGCGCACAACAGTTTGTCTTTCTGCTTTCTACGCGTGCTGGTGGTCTCGGCATCAATTT
AGCAACGGCGGACACGGTGATTATTTACGACTCCGATTGGAATCCGCACAACGACATCCAAGCGTTCAGCAGAGCTCACA
GGATAGGCCAGGCTAACAAAGTTATGATCTATAGATTTGTCACGCGTAACTCCGTGGAAGAAAGAGTAACGCAGGTGGCC
AAGCGCAAGATGATGCTCACTCATTTAGTCGTGCGACCAGGCATGGGCGGTAAAGGTGCTAACTTTAGTAAACAGGAGCT
CGATGACATTTTGCGCTTCGGTACGGAGGAACTGTTCAAGGAAGAGGAGGGCAAGGAGGATGAAGCTATACACTACGACG
ATAAGGCTGTTGCCGAATTATTGGACAGAAGTAAGGAGGGTATCGAGCAGAAGGAGAATTGGGCCAACGAGTACTTAAGT
TCCTTCAAGGTCGCCTCGTACGTGACGAAGGAAGGTGAAACGGAGGAGGAGGCGGACACGGAAATAATTAAGCAAGAGGC
CGAGAATACCGATCCGGCATATTGGATCAAGCTGCTCAGACATCATTACGAGCAGCAACAGGAGGATATTGCTAGAACAC
TCGGAAAAGGCAAACGAGTGCGTAAACAAGTTAACTACACCGATGGCGGTGTGACCGGCGATCAAGGCGCGAGAGATGAT
CAGCCGTGGCAGGAGAATCTATCTGATTATAATAGCGACTTCAGTGCGCCCAGCGACGACGACAAGGAGGATGATGATTT
CGACGAGAAGGGCGATGGAGACTTATTGTCTCGTAGAAGTAGACGAAGACTGGAGAGACGCGACGAAAAGGACAGACCTT
TGCCGCCTCTGCTTGCCAGAGTAAACGGAAATATCGAGGTGCTAGGTTTTAATGCCAGACAGAGGAAGGCATTCCTCAAT
GCAATTATGCGCTATGGAATGCCGCCACAAGACGCTTTCAACTCTCAATGGTTGGTACGTGATCTGCGCGGAAAGTCCGA
GAAGAATTTCAAAGCCTACGTTTCGCTCTTCATGCGACACCTCTGCGAACCAGGTGCCGACAATGCGGAAACGTTCGCAG
ACGGCGTTCCTCGAGAAGGTCTCAGTCGACAGCACGTACTCACAAGAATCGGTGTGATGTCCTTGATTAGGAAGAAGGTT
CAAGAATTTGAACACATTAATGGCTATTATTCGATGCCGGAGATGATACGAAAACCGATAGAACCCATCAAGCCGGAAGG
AACCGGGGAAGCAGCGACTGGTACCAGCAGCACTAGTGCTACACCTGCCACTTCGAATGCTCCCAGTCCTAGTCCTGCTG
CCACGCCGACTCCGACTTCGACTGCCGGTGCCGCCATCGAAGCCAGCAAGACGAATTCCGATGCATCTGACGCTAAAGAA
TCTAAAGATGAATCGAAGGATAAGGAGGGTGGCGACGCGAAGGATTCGAAAGAAGACTCGAAGAATTCTAAAGAAGATGA
CGAAGGAAATTCTGAAAAGGACAAGGAGAAGGAAGATATTAAGAAAGAGGAAAAGGACGGCGAGACGGAATCCGCAGAAA
AGGAGAAGGACAAAGCCGATGTGAAGGACGAGAAAGCAGCAGCGGCGAAACACGACGATAAAGCAGAGAATAGTGAGAAT
AAGAAGACCGAACCAGAAGAAGATGTCGTTATTGTGAAGGACGACGAGGAGGAAACAGAGAAGCGAGAGGAGAAAGATAA
CAAAGAAAAGGACGTAAAGGACTCTGAAGATGTAGTGAAGCCTAAGCGTAAGTTCATGTTCAACATAGCCGATGGTGGAT
TCACGGAATTACACACGCTCTGGCTGAACGAAGAGAAGGCCGCCGTGCCGGGCCGTGAATACGATATCTGGCATCGTCGC
CATGATTATTGGCTCTTGGCTGGTATCGTCACGCACGGCTACGGGCGATGGCAGGATATACAAAATGATATTAGGTTTGC
TATAATTAACGAGCCATTCAAGATGGACATGGGAAAAGGCAATTTCTTGGAGATAAAGAACAAGTTTCTAGCGAGACGTT
TCAAGCTCTTAGAACAGGCGTTAGTGATCGAGGAGCAGTTAAGGCGAGCCGCTTACCTAAACCTTACGCAGGATCCCAAT
CATCCTGCCATGAGTTTGAATGCGCGATTCGCCGAAGTCGAGTGTCTCGCCGAATCCCATCAGCATCTTAGCAAGGAGAG
CCTTGCGGGCAACAAACCGGCGAATGCGGTGTTGCACAAGGTATTGAATCAGCTGGAAGAGCTCTTGTCCGACATGAAGT
CAGACGTGAGCCGTTTGCCGGCGACATTGGCGCGCATTCCACCGGTTGCTCAGAGACTCCAGATGTCTGAGAGATCAATA
CTGAGTCGATTGGCGGCCACGGCACCCGGCGGAAGCAGCTCTCAGACAGGCCAGGCCGCACTACTGGCGCAGCAATTTCC
AGCTGGCTTCTCCGGCGGACAATTGCCGGCCACTTTCGCGGGCGCCGCCAATTTCGGAAACTTTCGACCACAATACTCAG
TACCAGGGCAACCACCGCAGGGTTTCACAGGTCTGTGA
PEP:
>LH20211-PA
MASDEEVDENYAGEDDMDETGGQVSNVGQPVDGSSDAEESQRLEEDDDYEPEERKKKKGKKRKARSEDKKGKKKKKKKKS
DSGDESDFGGGEAAAGDAAGEDSDYAVNRKSRKSSSRKSSSHNAPPTTQSQEPTTGMPTIEEVCNTFGLTDVQIEYSDAD
FQNLTTYKLFQQHVRPLLAKENPKVPMSKLMMLVAAKWRDFSELNPHTQPDADVSSTNVDDDNRNARANRSGAIQEPEDE
EEDDEDSDRKKKSRGSRAKKGKKASKVPTLKIKLGKRKRGSSDEEAEGSAAGSAADSDMEFEQMLADAEETPGVDGNKGN
VEEAGVEPPAEPPVRRKAKTKIGNKTKKKKKTKTTSKFPDGEEGLQTDHQDYCEVCQQGGEIILCDTCPRAYHLVCLEPE
LEETPEGKWSCAHCEGEGIAGAAEDDDEHMEFCRVCKDGGELLCCDSCTSAYHTHCLNPPLSEIPDGDWKCPRCSCPPLR
GRVAKILTWRWKECSDTPSEEPSTSKAAPKQRKIREFFVKWADMSYWHCDWITELQLDVFHPLMFRNYYRKYDMDDPPKL
EEPLDESDTRVKRLKEQPGATNRDEYNLEERFYRYGVRPEWLVVHRVINHRLQRDGRATYLVKWRELGYDQATWEDEHAD
IPGLKQAIEYYLDLRAANCCDGTTSRKGKKGKGKKSKTRELIDDEERTPKRYTPPPDKPTTDLKKKYERQPDYLDQTGMQ
LHPYQLEAIFTLHFLNSQGLNWLRYSWGQGIDTILADEMGLGKTIQTITFLYSLYKEGHCKGPFLVSVPLSTIINWEREF
ETWAPDFYCVTYVGDKDSRIVIRENELSFEEGAVRSGRASKIRSSSIKFNVLLTSYELISIDSACLGSIDWAVLVVDEAH
RLKSNQSKFFRLLASYNIAYKLLLTGTPLQNNLEELFHLLNFLCRDKFNDLAAFQNEFADISKEEQVKKLHEMLGPHMLR
RLKADVLKNMPSKSEFIVRVELSPMQKKYYKYILTRNFEALNPKGGGQQVSLLNIMMDLKKCCNHPYLFPAASQEAPTGP
NGSYETSALIKAAGKLVLLSKMLKKLRDDGHRVLIFSQMTKMLDILEDYLEGEGYKYERIDGNITGAQRQEAIDRFNAPG
KNLITGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKR
KMMLTHLVVRPGMGGKGANFSKQELDDILRFGTEELFKEEEGKEDEAIHYDDKAVAELLDRSKEGIEQKENWANEYLSSF
KVASYVTKEGETEEEADTEIIKQEAENTDPAYWIKLLRHHYEQQQEDIARTLGKGKRVRKQVNYTDGGVTGDQGARDDQP
WQENLSDYNSDFSAPSDDDKEDDDFDEKGDGDLLSRRSRRRLERRDEKDRPLPPLLARVNGNIEVLGFNARQRKAFLNAI
MRYGMPPQDAFNSQWLVRDLRGKSEKNFKAYVSLFMRHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQE
FEHINGYYSMPEMIRKPIEPIKPEGTGEAATGTSSTSATPATSNAPSPSPAATPTPTSTAGAAIEASKTNSDASDAKESK
DESKDKEGGDAKDSKEDSKNSKEDDEGNSEKDKEKEDIKKEEKDGETESAEKEKDKADVKDEKAAAAKHDDKAENSENKK
TEPEEDVVIVKDDEEETEKREEKDNKEKDVKDSEDVVKPKRKFMFNIADGGFTELHTLWLNEEKAAVPGREYDIWHRRHD
YWLLAGIVTHGYGRWQDIQNDIRFAIINEPFKMDMGKGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNLTQDPNHP
AMSLNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKSDVSRLPATLARIPPVAQRLQMSERSILS
RLAATAPGGSSSQTGQAALLAQQFPAGFSGGQLPATFAGAANFGNFRPQYSVPGQPPQGFTGL
Swiss-ProtChromodomain-helicase-DNA-binding protein Mi-2 homolog
KEGG     K11643  CHD4, MI2B; chromodomain-helicase-DNA-binding protein 4 [EC:3.6.4.12]     
SUPERFAMILYSSF57903  FYVE/PHD zinc finger superfamily     
Gene3DG3DSA:3.30.40.10     
PfamPF08074  CHDCT2; CHDCT2 (NUC038) domain     
SMARTSM00249     
ProSiteProfilesPS51192  HELICASE_ATP_BIND_1; Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.     
CoilsCoil
ProSitePatternsPS00690  DEAH_ATP_HELICASE; DEAH-box subfamily ATP-dependent helicases signature.     

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