Warning! We strongly recommend Internet Explorer (9.0 and later) and Google Chrome for better display.

Gene detail [Fasta]

Species Danaus plexippus
GeneDPOGS206806
PositionDPSCF300001:4124608..4147483[GBrowse]
MonarchBasehttp://monarchbase.umassmed.edu/tools3/Get_gene.cgi?id=DPOGS206806
sequence mRNA: 
>DPOGS206806-TA
ATGTCAAGCAATCCTCAGTGGAAAATGTTCCAGCCGCCAGATTCACACAACTCCCCTTTACAGGATATTTTAGATCTCCA
ACAATCAAATATGCAGGCCAAACAGGTTTATCGTAATGGTACTTACAGCGGTGAGTACCCAAGTTCCCCTCGAGATAATT
TTAATAATATGGGCAAGTCAAGTGGTGGAAATAGATTTTCTGTTGGCAATTATAATTTGGATGGATGTCCCATGGGAGAT
TCTGTGGGAGTGTATTCTTCCAGTTCAACCAATAACCAATCTCAGTATGATTCCACGAATCACCCACCTATAAGAGAAAC
AGGGATTATTGAAAAATTGCTTCATTCCTATGGCTTTATACAATGCTGCGAGAGGCAAGCTCGTCTATTCTTCCACTTTA
GCCAGTTTGGTGGTAATATAGACCATCTGAAAATAGGTGACCCAGTAGAATTCGAGATGACTTACGACCGTCGTACTGGC
AAACCAATTGCGTCTACAGTAACTAAAATAGCCCCCGAGGTGGTACTGAGTGAGGCTCGAGTTACCGGAGTAGTGACTAC
GGAGGTGAAGGGAGAGGGTTCAGGGGATAACACCGGACGCATATCGTATGAGAACCGCGGCGAATGCTTTTTCTTGCCGT
ATACTAAAGATGACGTCGAAGGAAACGTAACCCTTCGTACAGGAGACGCTGTCAGCTTCCAAATCGCAACCAACCAAAGA
GGCACTCTTGGAGCGTGTCACGTGCGTTTCGAGAACCCCGCGCATCCCGTCAAGTATCATGGCGTAGTGTGTTCTAAGAA
GGAAAATTTTGGTTTCATCGAGCGGGCTGATGTCGTTAAGGAGATATTCTTCCATTACTCTGAAGCCAAGGTCAAAGAGG
AGCTGTCTCTAGGAGATGACGTGGAGTTTATAATACAGACTAGGAATGGTAAGGAGGTTGCGTGCAACATCAGTAAGCTG
CCGAGTGGGTCGGTTGTGTTCGAAGACGTTAGCCCGGAGCAGCTTCGGGGGCAGGTGCTGAAGCCGCTGGAGCGTGGGGC
GCGACTCCAGAGCGACCCTCTACCAGGCAGGATCAGATACAGGGCACCGGACCATTCTGAAGTTGAGGTGCCTTTCGGCG
ACAAAGACCAGTGCGGGGAGTTCACCTTGCGGCACGGGGATTGGGTCCAGTTCCAAGTGGCAACGGACAGACGGGATCAA
CTGAAACGGGCAACCAATATATCGCTGCTGGATGAGTCATTCAACGTATCAGGCGAAAGACGTGAACAGGGCATTGTTTG
TTCCTTGAGAGATGGCTTCGGTTTCATCCGATGCGTAGAGCGTGAGCAGACCATGTTCTTCCACTTCGCCGAGGTGTTGC
GTCTCGGCCAGGAGTTAAGTGTTGGCGACGAGGTTGAGTTCACCGTGGATCCTTTGTCATCCTTCTCCAACATGAACAGC
CGCCAGTCAGCCATCCGTATCCAGCACTTGTCTGCTGGTTCCGTACAGTTCGAGTCCCTTGTGGAGCGAGGCGTCCGCGG
GGTCGTCACCAAGGAAGCGCATTATTCCAACGAGAGTCCCAACAGAAACTCACCGAATGAGTCCGGTATCATAACGTGTC
AAATAAACAACTTGAAGAAATCTATACCATACACGGTCAAGAAATGTGAATCAAAGATGCTGCCTCGCGTGGGCGACAAA
GTGACCTTCGATCTGTATCAGGTGAAGAGGACTAAGGAGCTGGTTGCTATGAGTGTGACGATGCAGCACAGCATGACGAA
CGGCCGGATTGGAGGGGCGGGGGCTGGAGGGGGATCGGGGGCGGCCACCCAGCAGGGCTTCGTGGCCGCACTCAAGGATG
GCTTCGGTTTCATTGAGACAGCCGATCACACCAGGGAGGTGTTCTTTCATTTCAGTAATCTGGAAGGCAGCCCGGATGTA
TTGGAGTTGGGTTCAGAGGTGGAGTACACTGTGGGTCGTCAGAGCAGCGCTAGCGGTGGTTGTGCCAGCGCCGAACATGT
GCGACCACTGCCTCGTGGAACTGTGCCCATTGCACGACCCCTGGAACCTCCTCTCACCGGCACGGTGACACGTACGCTGA
GGGCCCTCAACCCCGACCAGGCCAAGTACTCTGGCTTAATCCAAGTGGAGGGTGGAATGACCTACGAATTTGGCATCATG
GGACTAGCGAGCAAGCGAGAGATTCTGCAAGTTGGCGATCCGGTCACATTTCAGTCGGACATGGAAGGTCGCGCTACTAA
CATAGTGCCCATTAGAAAGAAGAGACGGGCCACCGTAGACGCTATAAAAGGCGGCTTCGGTTTCCTGTCTCTCGAGGCTG
AGGAAGGTCGCCGTCTCTTCTTCCACATGAGTGAGGTCCGCGGGAACCCTTCAGATCTGGCGCCCGGGGACGCCGTCGAG
TTTGTGATGCTAACCAACCCCAGGAACGGGAAGTGCTCAGCCTGCAATGTCGTCAAAGTCGGGAGCAACAGCAGCAATAG
CAAGATATCAAAGCGCGATCGCGAGAGGGAGCGTGAGAGAGAGCGTCCAGAGAGGCCGGAGCGTCTGCTGGCCAGGCTGA
GGACGGTGTCACTGGAGGAGCCCGGGCCGCGCGTGCTGGTGTTGCGACCCCCGCGGGGACCGGACGGCAGCCTCGATACC
AGCCGCACCACCACCCGCCGCAGAGTCTACAGGTTCGGTAAGCAGCCCCCGCCGCCGCCGCCGCCGGGCCGTCCGTGA
PEP: 
>DPOGS206806-PA
MSSNPQWKMFQPPDSHNSPLQDILDLQQSNMQAKQVYRNGTYSGEYPSSPRDNFNNMGKSSGGNRFSVGNYNLDGCPMGD
SVGVYSSSSTNNQSQYDSTNHPPIRETGIIEKLLHSYGFIQCCERQARLFFHFSQFGGNIDHLKIGDPVEFEMTYDRRTG
KPIASTVTKIAPEVVLSEARVTGVVTTEVKGEGSGDNTGRISYENRGECFFLPYTKDDVEGNVTLRTGDAVSFQIATNQR
GTLGACHVRFENPAHPVKYHGVVCSKKENFGFIERADVVKEIFFHYSEAKVKEELSLGDDVEFIIQTRNGKEVACNISKL
PSGSVVFEDVSPEQLRGQVLKPLERGARLQSDPLPGRIRYRAPDHSEVEVPFGDKDQCGEFTLRHGDWVQFQVATDRRDQ
LKRATNISLLDESFNVSGERREQGIVCSLRDGFGFIRCVEREQTMFFHFAEVLRLGQELSVGDEVEFTVDPLSSFSNMNS
RQSAIRIQHLSAGSVQFESLVERGVRGVVTKEAHYSNESPNRNSPNESGIITCQINNLKKSIPYTVKKCESKMLPRVGDK
VTFDLYQVKRTKELVAMSVTMQHSMTNGRIGGAGAGGGSGAATQQGFVAALKDGFGFIETADHTREVFFHFSNLEGSPDV
LELGSEVEYTVGRQSSASGGCASAEHVRPLPRGTVPIARPLEPPLTGTVTRTLRALNPDQAKYSGLIQVEGGMTYEFGIM
GLASKREILQVGDPVTFQSDMEGRATNIVPIRKKRRATVDAIKGGFGFLSLEAEEGRRLFFHMSEVRGNPSDLAPGDAVE
FVMLTNPRNGKCSACNVVKVGSNSSNSKISKRDRERERERERPERPERLLARLRTVSLEEPGPRVLVLRPPRGPDGSLDT
SRTTTRRRVYRFGKQPPPPPPPGRP
Swiss-ProtCold shock domain-containing protein E1
SUPERFAMILYSSF50249  Nucleic acid-binding proteins superfamily     
Gene3DG3DSA:2.40.50.140     
PfamPF00313  CSD; 'Cold-shock' DNA-binding domain     
SMARTSM00357     
ProSitePatternsPS00352  COLD_SHOCK; 'Cold-shock' domain signature.     
OrthologiGroup-00655    Cold shock domain-containing protein E1      

You might be interested in these researchers

You might be interested in these references