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Gene detail [Fasta]

Species Acromyrmex echinatior
GeneAECH18866
Positionscaffold261:1120943..1124680[GBrowse]
Ant Genomes Portalhttp://hymenopteragenome.org/cgi-bin/gb2/gbrowse/aech_20/?name=AECH18866
sequence mRNA: 
>AECH18866-RA
ATGTCCAACAATCCTCAGTGGAAAACGTTCCAGCCGCCAATCATGAACTCTGACCCAGCAATACTCGACTATAAGTCTAT
GGCTATACCAAGTCCTAAAGCCATAACGGAATATCAGCCGACAACTAATAATTATCGAAATGGTACCAATTACAGTGGTG
ATCATATAGTTTCACCTCCTGAATGTAAAAACTCTACTAACTCTTATGGAAGTTATCCTGGTACACAGTCATCGCCACGC
AATGGCGCTACAAGATTCCCGTTTGAATTTACGGGTATGGAGACAAATGCTGGGTATACAAACGAACCTGCCACCAGTAA
TTCCACCTATCAGGATCAATCTGCGAATCAAGGAACACGGGAAACTGGTATAATTGAGAAATTATTGCATTCTTACGGAT
TCATACAGTGCTGTGAAAGACAGGCAAGATTGTTTTTTCATTTTAGCCAATTTAGCGGTAATATTGAACATTTGAAGATT
GGAGATGCGGTAGAGTTTGAAATGACTTACGATCGACGAACAGGCAAGCCCATTGCAAGCACCGTTAGCAAAATTGGTCC
AGTGTCATTAGGTGATCAAAGATGCATCGGTAATGTAACCACAGAGTTACAAGCAAGTGGCGATTCGGGACGTATCACTT
TCGAATACCGTGGAGAATGTTTTTTTCTGCCATATACCAAAGATGATGTTGAGGGAAACGTCACCTTACGTACTGGTGAT
AAAGTATCATTTCAAGTTGCAAATAATCAACGAGGAGTCTTGAATGCATGTAATGTAAGGCTGGAAAATCCAGCACATCC
AGTTCGTTATCGCGGAGTGGTATGCTCAATGAAAGAAAATTTTGGTTTTATCGAGCGTGCTGATGTAGTCAAAGAAATAT
TCTTCCACTTTAGCGAAGCTAAATCTATGAAAGAAGAACTTAGGCTAGGAGATGATGTGGAGTTTATAATACAAACGCGC
AATGGGAAAGAGGTAGCTTGCAATATTACAAAGTTACCACCCGGCTCAATTGTATTTGAGGAAGTCAGTAACGAAGTGGT
AAAAGGCCAAGTGTTGAAACCTTTGGAGAGAGGTAATGCTGCTCGTCATCAAAATGATCCATTACCTGGTCGTATTCGAT
ACAGAGACAGTGATCATTCTGAAGTTGAAGTGCCCTTTGGCGATAAAGATCAAAAGGGAGACTTTACTCTTAGGCATGGG
GACTGGGTCCAATTTCGTATTGCAACAGATACTAGAGATCAACTCAAAAGAGCTACAGAGATAATGTTATTACCAGAATC
TTTCACTGTGTCTGGAGAAAGACGGGAGCAGGGTGTAATACAATCTCTCAAGGATGGTTTTGGCTTTATTCGTTGTGTAG
AAAGAGAACCCAGACTTTTCTTTCATTTTAATGAGGTTCTTGATGTTGATAGAGAAATTAGTGTAGGAGATGAAGTTGAA
TTTACAGTCGTACAAGACCCATCATCATCATTCTCTAATACTCGACAAAGTGCTATTAGACTGAAACATTTGCCAATGGG
TACCGTAACATTTCAAACTATTATAGAAAAAGATATATTAGGTACTGTAGCACAAGACACAAATTCGATGGAACCTGGCC
TCATTAATTATGGGCAGCAGAAAAGCATTATTTTCTTCTCCAAAGATTGCGACCCTAAACATATTCCAAAATTGGGTGAT
AAGGTAATGTTCAATATTGTTCAAGTGAAACGAAATAAAGAACTTGTTGCTGAAGACATATTTTTAGTAAATGCCGCTGG
TGAAAAAATTCAAAATGTTAACAAAAAATCAAATGGACAAGTATGTCAAGGATTTATTGCCGCCCTTAAAGACGGGTTTG
GTTTTATTGAGACAGTAAATCATGATAGAGAAATATTTTTTCACTACAGTAATTTTGAAGGCGACGCTAGTACATTGGAA
TTAGGAGCCGATATCGAATGTACAATTAGTAGTTCGAGCAATGGAAGAGGTTCTGGAGGTTGTGTAGCTGCTGATCATGT
TAAACTGGTACCTCGTGGAAGTATTCCCAGGCCAACACCTGTTAGCGAGGTACTCGACGGTACTGTGGTGCGACCACTGC
GAAGTGCAAATCCCGAGCAAGTTGAATACGCTGGTTTGATCAAGATTAATCCAACTAATGAAGATGAGGAGACGCCAGAA
TATGAATTCGGAATCATGGGACTTTCTAACAAACGGGAGCTATTGCAGGCTGGCGATCCTGTGCAATTACAGGTCGATTC
AGCAGGTCATGCTTGTAATATCGTAGCCGTCAGGAAAAAAAGAAGAGCTACTGTGGATGCGATGAAGGGTCCTTTCGGCT
TTCTCGCTTACGAAGTCGATGAGGGCAGAAAATTATTCTTCCATGTAAGTGAAGTTCGAGATCATGTTACGCTGCAGCCG
GGAGATCAAGTAGAATTCGTTTTGGTTACTAATCAACGCACTGGCAAATCATCAGCATGCAATGTAACTCGATTAAGCGA
TACAGTCCAGCAACGACCCGAACGATTAATAAGTCGATTACGTACTACATCGCTAGAAGATTCAGGCCCAAAATTAACTG
TGGTCAGGCAACCAAGAGGACCTGATGGTACGCGTGGATTCAACCAGGAAAGATATCAGCGTATTCCTGGTGCCATAGAA
GAATAA
PEP: 
>AECH18866-PA
MSNNPQWKTFQPPIMNSDPAILDYKSMAIPSPKAITEYQPTTNNYRNGTNYSGDHIVSPPECKNSTNSYGSYPGTQSSPR
NGATRFPFEFTGMETNAGYTNEPATSNSTYQDQSANQGTRETGIIEKLLHSYGFIQCCERQARLFFHFSQFSGNIEHLKI
GDAVEFEMTYDRRTGKPIASTVSKIGPVSLGDQRCIGNVTTELQASGDSGRITFEYRGECFFLPYTKDDVEGNVTLRTGD
KVSFQVANNQRGVLNACNVRLENPAHPVRYRGVVCSMKENFGFIERADVVKEIFFHFSEAKSMKEELRLGDDVEFIIQTR
NGKEVACNITKLPPGSIVFEEVSNEVVKGQVLKPLERGNAARHQNDPLPGRIRYRDSDHSEVEVPFGDKDQKGDFTLRHG
DWVQFRIATDTRDQLKRATEIMLLPESFTVSGERREQGVIQSLKDGFGFIRCVEREPRLFFHFNEVLDVDREISVGDEVE
FTVVQDPSSSFSNTRQSAIRLKHLPMGTVTFQTIIEKDILGTVAQDTNSMEPGLINYGQQKSIIFFSKDCDPKHIPKLGD
KVMFNIVQVKRNKELVAEDIFLVNAAGEKIQNVNKKSNGQVCQGFIAALKDGFGFIETVNHDREIFFHYSNFEGDASTLE
LGADIECTISSSSNGRGSGGCVAADHVKLVPRGSIPRPTPVSEVLDGTVVRPLRSANPEQVEYAGLIKINPTNEDEETPE
YEFGIMGLSNKRELLQAGDPVQLQVDSAGHACNIVAVRKKRRATVDAMKGPFGFLAYEVDEGRKLFFHVSEVRDHVTLQP
GDQVEFVLVTNQRTGKSSACNVTRLSDTVQQRPERLISRLRTTSLEDSGPKLTVVRQPRGPDGTRGFNQERYQRIPGAIE
E
Swiss-ProtCold shock domain-containing protein E1
SUPERFAMILYSSF50249  Nucleic acid-binding proteins superfamily     
Gene3DG3DSA:2.40.50.140     
PfamPF12901  SUZ-C; SUZ-C motif     
SMARTSM00357     
ProSitePatternsPS00352  COLD_SHOCK; 'Cold-shock' domain signature.     

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